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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTTTACTGTAAATGTTGTGAGAAATCTGAGCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATgtgagcattattggttcacatgcttaatgttcttggactttctgatgtgtatttttctgattagcatgtttcttcatgcag

Basic information

species Glycine max
transcript GLYMA04G10060.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G10060.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv18s0001g07520.t01 (Vitis vinifera), 5'ss of exon 8
CAAGTTTACTGTAAATGTTGTGAGAAATCTGAGCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATgtgagc-----attattggttcacatgcttaatgttcttggactttctgatgtgtatttttctgattag-catgtttcttcatgcag------------------------------
||| || || || ||||||||||| ||||| ||||||| | |||||||||| |||||||   |  |||| ||||| |||||||||||  | || |||||||||||      |  ||||||| |  | | |      || |  |||    |  |      ||    || | | | |  ||||||                                  
CAAATTCACAGTGAATGTTGTGAGGAATCTCAGCCAGAGAACTCATTGGCGCATCAAGACACAACTTGCCATCAGCCACTTGGATGTCGATAAGATTAATgtgagtgagcaaaaattggtttatctacctctcaa-ctagatcttgtctacttaagcacttggttttggtcctttcccttcatttgatgaattgggttatctcttttctggttacag

upper sequence: GLYMA04G10060.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 11
CAAGTTTACTGTAAATGTTGTGAGAAATCTGAGCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATgtgagc-----attattggttcacatgcttaatgttcttggactttctgatgtgtatttttctgattagcatgttt-cttcatgcag------------------------------
||| || || || ||||||||||| ||||| ||||||||  | |||||||| ||||||| | || |||| ||||| ||||||||||| || || |||||||||||      |  |||| || |  | | |      || |  ||| || |  ||     ||||  || |    ||  ||||||                                  
CAAATTCACAGTGAATGTTGTGAGGAATCTTAGCCAGAAGACCCATTGGCGCATCAAGACTCACCTTGCCATCAGCCACTTGGATGTCAATAAGATTAATgtgagtgagcaaaaattgctttatctacctgtcaa-ctagatcttgcttacttgagcacttctttttggtcctttcacttcatttgatgaattgggtcctctcttttctgctcacag