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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACTTCTTGCTCAGAGTGCAGTCCATGGTGCAATGGCAGGGTATACTGGATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttctacatatcattatccaaattctgaactgtttaagaaaatataatgtgttgctgtttttttatttgggtacaataattttctattcttgttt...

Basic information

species Glycine max
transcript GLYMA04G09180.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193473086|gb|FK436675.1|FK436675
EST:     GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAAT                         AGAATCAATGAGAGGCA
genomic: GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCA
EST: gi|193532952|gb|FK488530.1|FK488530
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|207767243|gb|GD739655.1|GD739655
EST:     GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAAT                         AGAATCAATGAGAGGCAG
genomic: GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAG
EST: gi|193437677|gb|FK403516.1|FK403516
EST:     ATTTACAGTTGGACTGGTCAACGGCAGACATTACTTATATTCCATTCAAT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACT
genomic: ATTTACAGTTGGACTGGTCAACGGCAGACAT-ACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACT
EST: gi|193698617|gb|FK634956.1|FK634956
EST:     ATACTTATATTCCATTCAAT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: ATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|208279344|gb|GE080831.1|GE080831
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|193389545|gb|FK357160.1|FK357160
EST:     GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAAT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|213594161|gb|DB981433.1|DB981433
EST:     GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATACTCCATTCAAT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|193650647|gb|FK595854.1|FK595854
EST:     GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAAT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|193371119|gb|FK337360.1|FK337360
EST:     GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAAT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|207799035|gb|GD771016.1|GD771016
EST:     GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAAT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|208215240|gb|GE010169.1|GE010169
EST:     TGGACTGGTCAACGGTCAGACATACTTATATTCCATTCAAT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: TGGACTGGTCAACGG-CAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|208301127|gb|GE097364.1|GE097364
EST:     GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAAT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|193526896|gb|FK485066.1|FK485066
EST:     GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAAT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|209713675|gb|BW679374.1|BW679374
EST:     GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAAT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAACGGCAGACATACTTATATTCCATTCAATgtaagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA