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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTGTCTCCCCACTTCCTTCACAAGgtttgctagtttatgttttagtggtggcattatgcatgtggtgttggtgatatcatattatcatctttggaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag

Basic information

species Glycine max
transcript GLYMA04G09080.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09080.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g54100.1 (Oryza sativa), 5'ss of exon 12
CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTGTCTCCCCACTTCCTTCACAAGgt---ttgctagtttat-gttttagtggtggcattatgcatgtggtgttggtgatatcatattatcatctttggaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag
  |  |  | ||||| || ||||| ||||| || || ||||||||||||||||| |||||  | || ||||||||||| || || || || |||||||||||   | ||| | |  | |||| | |||||| |  |  | |       |  | | || |  ||   |       |  ||          | || |  | ||  ||   || | || ||  |   |    | | |     ||                    
TTGCATAACATCTTGCTCAAATCTGTGGGCTCTAATCATGGATGCTGGCACTGGGTTCACTTCCCAGGTTTATGAACTTTCACCACATTTTCTTCACAAGgtgagtagcttgctccttgtttaactggtggaa--aatcttagcaaactaatcacataacttttcaaggc--aaagttacatataaggaagctcttgtatacattgtcaaatgtgattccatggttttctggtcatttgaag-------------------

upper sequence: GLYMA04G09080.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g10150.1 (Oryza sativa), 5'ss of exon 12
--CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTGTCTCCCCACTTCCTTCACAAGgtttgctagtttatgttttagtggtggcattatgcatgtggtgttggtgatatcatattatcatctttggaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag
  |||| |  | || |||||  |||| |||||  | ||||||||||||||||||||||| ||||| |||||  ||||||| || |   |||| |||||||||||     | |   |||  |  |  |   |||  | ||||  | ||  |  |||| | |  |    |    | | |  ||  |    ||| | ||   |   |                                                       
TTCAGTTT--CATCCTGTTCAGATCTGTGGGCTTTAATTATGGATGCTGGCACTGGTTTTACCGCCCAAGTACATGAACTCTCCCATTACTTTCTTCACAAGgtaaataattgcgtgtcatcctact---attgagtatgtattttttttcctatc-tgtggttggttactaatcaagcatactcagctctatcctaattgccatc-----------------------------------------------------

upper sequence: GLYMA04G09080.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 12
CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTGTCTCCCCACTTCCTTCACAAGgtttgctagtttatgttttagtggtggcattatgcatgtggtgt-tggtgatatcatattatcatctttggaactattatcgttttatctgtactgtattttactaatt-ttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag-------------------------
    |||||||||||||| ||||| |||||  | || ||||||||||||||||| || ||  | ||||| ||||| || ||||  || || |||||||||||  | || || |  || |  | || | | | |   | |  ||  || |  |||| |  |      |  |   |||| |   ||  | || |||  |   | | ||||   |   | | | ||| | | |  | |||     | ||| |  ||   | |                         
TTCAGTGGCTTCTTGTTCAAATCTGTGGGCTTTAATAATGGATGCTGGCACTGGATTTACTTCTCAAGTATATGAGCTTTCTCAACATTTTCTTCACAAGgtgag-taattaaaattattatagtagtactctttgtttcctgcatgctcctatccttctcatccatcggtggctatcaatattacagct-tacact--ctcaataatagctaagtgtgattta-catggtttcacactgctatgttccaattgttttgatatgctcgcctatgatgctcttag

upper sequence: GLYMA04G09080.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 12
CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTGTCTCCCCACTTCCTTCACAAGgtttgc----tagtttatgttttagtggtggcattatgcatgtggtgttggtgatatcatattatcatctttgga-actattatcgttttat-ctgtactg-tattttactaattttgttttta---acttaacgtaggc---taacaaactcacgtttctgtttaatag------
|||||| || ||||||   ||| | ||||| || ||||||||||| ||||||||||| || |||||||||||||| || || ||| | || |||||||||||  |     |   || ||||| |    |||||| |   || |    ||     | ||||   || |  |||    | ||| ||||    ||  |  |  | || ||   | |  ||  | |||   | ||||  |   |   | |  || | |  ||| | | |  |        
CAGTGTAGCGTCTTGTCAAAATTTGTGGGCGCTAATTATGGATGCAGGCACTGGTTTTACTGCACAAGTTTATGAGCTTTCACCCTATTTTCTTCACAAGgtgcgtctcatttcttttgtttaacccatggcat-acatatttatctttacatgtgtcatgcaattaaatttcatcagtatgatcgaggcatattacaaggctacttctttcagcttactgttatacatttaattttaacaagtgatcaattaatctttttttgttctgtctatag

upper sequence: GLYMA04G09080.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 12
CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTGTCTCCCCACTTCCTTCACAAGgtttgctagtttatgttttagtggtggcattatgcatgtggtgttggtgatatcatattatcatctttggaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag
|||||||||||||||| | ||||| ||||| || ||||||||||| || || || || || || ||||||||||| ||||| |     ||||| ||||||||      || | || | |   | |    || ||  |    | |      | || |    |||    | ||||   ||||  | | | ||  |  |    |   |  ||   |  ||  || ||                                 
CAGTGTGGCTTCTTGTACAAATCTGTGGGCTCTTATTATGGATGCGGGGACAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGgtg----ggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgt----tcaatgatagaacagctatccctgt-tatgcgccatgccct--cacattgagtcatatttttacag-------------------------------

upper sequence: GLYMA04G09080.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 5'ss of exon 12
CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTGTCTCCCCACTTCCTTCACAAGgtt--tgctagtttatgttttagtggtg--gcattatgcatgtggtgttggtgatatcatattatcatctttggaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag
|||||||||||||||| | ||||| ||||| || ||||||||||| || || || ||||| || |||||||| || |||||||     ||||| || |||||   ||||   | ||  ||||||| |   || |  ||  | ||  |    |  |      |  || | | |||||  |||| | |  |   ||    ||||| |||                                                      
CAGTGTGGCTTCTTGTACAAATCTGTGGGCTCTTATTATGGATGCGGGGACGGGATTCACAGCCCAAGTTTACGAGCTGTCTCATGTTTTCCTCCATAAGgtaagtgctcagtgattgtttagtgtttctgcttgttgtttttgaaggatctagttggccctcttcttttgtggaa--attaacatggtcattg----gtattctacag----------------------------------------------------