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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTCTCTCCCCACTTCCTTCACAAGgttggctagtttatgttttagcggtggcattatgcgtgtggtgttggtgatatcctattatcatctttgtaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag

Basic information

species Glycine max
transcript GLYMA04G09070.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09070.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g10150.1 (Oryza sativa), 5'ss of exon 12
--CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTCTCTCCCCACTTCCTTCACAAGgttggctagtttatgttttagcggtggcattatgcgtgtggtgttggtgatatcctattatcatctttgtaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag
  |||| |  | || |||||  |||| |||||  | ||||||||||||||||||||||| ||||| |||||  |||||||||| |   |||| |||||||||||     |  ||  || | | |  |   |||  |  |||  | ||  |  |||| | |  |    |    | | |  ||  |    ||| | ||   |   |                                                       
TTCAGTTT--CATCCTGTTCAGATCTGTGGGCTTTAATTATGGATGCTGGCACTGGTTTTACCGCCCAAGTACATGAACTCTCCCATTACTTTCTTCACAAGgtaaataa--ttgcgtgtcatcc-tactattgagtatgtattttttttcctatc-tgtggttggttactaatcaagcatactcagctctatcctaattgccatc-----------------------------------------------------

upper sequence: GLYMA04G09070.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g54100.1 (Oryza sativa), 5'ss of exon 12
CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTCTCTCCCCACTTCCTTCACAAGgttggctagtttatgttttagcggtggcattatgcgtgtggtgttggtgatatcctattatcatctttgtaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag
  |  |  | ||||| || ||||| ||||| || || ||||||||||||||||| |||||  | || ||||||||||| || || || || |||||||||||  | ||| ||     ||    ||   | |  | |     | || |  |  |  |   || |  |||  |   |   |     ||  | ||  | |  |      || | |   |     || ||      |     |   | |  | |  |    
TTGCATAACATCTTGCTCAAATCTGTGGGCTCTAATCATGGATGCTGGCACTGGGTTCACTTCCCAGGTTTATGAACTTTCACCACATTTTCTTCACAAGgtgag-tagcttgctcctt----gtttaactg-gtggaaaatcttagcaaactaatcacataacttttcaaggcaaagt-----tacatataaggaagctc-----ttgtatacattgtcaaatgtgattccatggttttctggtcatttgaag---

upper sequence: GLYMA04G09070.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 12
CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTCTCTCCCCACTTCCTTCACAAGgttggctagtttatgttttagcggtggcattatgcgtgtggtgt-tggtgatatcctattatcatctttgtaactattatcgttttatctgtactgtattttactaatt-ttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag-------------------------
    |||||||||||||| ||||| |||||  | || ||||||||||||||||| || ||  | ||||| ||||| || ||||  || || |||||||||||  | || || |  || |    || | | | |  || |  ||  || |  ||||||  |      |  ||  |||| |   ||  | || |||  |   | | ||||   |   | | | ||| | | |  | |||     | ||| |  ||   | |                         
TTCAGTGGCTTCTTGTTCAAATCTGTGGGCTTTAATAATGGATGCTGGCACTGGATTTACTTCTCAAGTATATGAGCTTTCTCAACATTTTCTTCACAAGgtgag-taattaaaattattatagtagtactctttgtttcctgcatgctcctatccttctcatccatcggtggctatcaatattacagct-tacact--ctcaataatagctaagtgtgattta-catggtttcacactgctatgttccaattgttttgatatgctcgcctatgatgctcttag

upper sequence: GLYMA04G09070.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G095634_T01 (Zea mays), 5'ss of exon 5
CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTCTCTCCCCACTTCCTTCACAAGgttggctagtttatgttttagcggtggcattatgcgtgtggtgttggtgatatcctatta--tcatctttgtaacta--ttatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag
  |  |  | ||||||||  |||| ||||| || || ||||||||||| |||||||||||  | ||| ||||||| |||  ||| || ||||||||||| ||  | |  | ||    || |      |  |||   | |            |   | | |  | |  ||  ||| ||   |||  | || |||  | ||     | |||||   | ||| |  |  | ||                               
TTGCATAACATCTTGTTCCGATCTATGGGCTCTAATCATGGATGCTGGAACTGGTTTCACATCCCAAATTTATGAGCTCATTCCACATTTCCTTCACAAAgtgag-tgatctacaccttggttcattctatataacttttacaaaataaccactttgtcaagtaaagttactaagtaagctattatcttctctacattgccaaat-ctaatggcggttt-atttccatgtgaag---------------------------

upper sequence: GLYMA04G09070.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 12
CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTCTCTCCCCACTTCCTTCACAAGgt-tggctagtttat---gttttagcggtggcattatgcgtgtggtgttggtgatatcctattatcatcttt-gtaactattatcgttttat-ctgtactg-tattttactaattttgttttta---acttaacgtaggc---taacaaactcacgtttctgtttaatag------
|||||| || ||||||   ||| | ||||| || ||||||||||| ||||||||||| || |||||||||||||| || || ||| | || |||||||||||  | ||  ||| |   |||| | |  |||||| |    | |    ||     | || |   || |  |||  | | ||| ||||    ||  |  |  | || ||   | |  ||  | |||   | ||||  |   |   | |  || | |  ||| | | |  |        
CAGTGTAGCGTCTTGTCAAAATTTGTGGGCGCTAATTATGGATGCAGGCACTGGTTTTACTGCACAAGTTTATGAGCTTTCACCCTATTTTCTTCACAAGgtgcgtctcatttcttttgtttaacccatggcat-acatatttatctttacatgtgtcatgcaattaaatttcatcagtatgatcgaggcatattacaaggctacttctttcagcttactgttatacatttaattttaacaagtgatcaattaatctttttttgttctgtctatag

upper sequence: GLYMA04G09070.2 (Glycine max), 5'ss of exon 12
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 12
CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTCTCTCCCCACTTCCTTCACAAGgttggctagtttatgttttagcggtggcattatgcgtgtggtgttggtgatatcctattatcatctttgtaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag
|||||||||||||||| | ||||| ||||| || ||||||||||| || || || || || || ||||||||||| || || |     ||||| |||||||| |    || | || | |  || |    || || ||   || |  |     |    |  |||    |  |||   ||||  | | | ||  |  |    |   |  ||   |  ||  || ||                                 
CAGTGTGGCTTCTTGTACAAATCTGTGGGCTCTTATTATGGATGCGGGGACAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGgtgg----gtgtgtggtgtctcgctcaagttttgggta--gtatatgcagcttgtcgt--tcaatgatagaacagctatccctgt-tatgcgccatgccct--cacattgagtcatatttttacag-------------------------------

upper sequence: GLYMA04G09070.2 (Glycine max), 5'ss of exon 12
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 5'ss of exon 12
CAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTCTCTCCCCACTTCCTTCACAAGgttggctagtttatgttttagcggtggcattatgcgtgtggtgttggtgatatcctatta----tcatcttt-gtaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatag
|||||||||||||||| | ||||| ||||| || ||||||||||| || || || ||||| || |||||||| || || ||||     ||||| || |||||  | |  |   || ||     |||   || ||| ||| || || |    |||   ||     || ||||| ||    |||| | |  |   ||    ||||| |||                                                      
CAGTGTGGCTTCTTGTACAAATCTGTGGGCTCTTATTATGGATGCGGGGACGGGATTCACAGCCCAAGTTTACGAGCTGTCTCATGTTTTCCTCCATAAGgtaag-tgctcagtgattgtttagtg--tttctgcttgttgtttttgaaggatctagttggccctcttcttttgtggaaattaacatggtcattg----gtattctacag----------------------------------------------------