Sequence
atgc intronic sequence ATGC exonic sequenceGAGTTGGGAATGATCCCAGAGAAGATCGTTATTTCAGCATCCCAAAACAAgtaagtagttataaggagtttcaatgattcacaaatacatgattaaaccagagagatcctcaccttcactaacaaatgctataactgtaaaaatagtgtg...
Basic information
species | Glycine max |
transcript | GLYMA04G07870.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G07870.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G103897_T03 (Zea mays), 5'ss of exon 7
GAGTTGGGAATGATCCCAGAGAAGATCGTTATTTCAGCATCCCAAAACAAgtaagtagtt-ataaggagtttcaatgattcacaaatacatgattaaaccagagagatcctcaccttcactaacaaatgctataactgtaaaaatagtgtg
||||||| |||||||| |||||||||| || ||||| |||||||||||||||||||||| | || | | | ||| || | | | | || || | | | | | ||| ||| | | | | | ||
GAGTTGGCAATGATCCACGAGAAGATCGATACTTCAGTATCCCAAAACAAgtaagtagttgaccagactgaactcttacctgaaaaatcaatactgtaatgaactgaatcttaggatatattgccactgcaatattttttagataaatgg-
upper sequence: GLYMA04G07870.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv04s0008g02670.t01 (Vitis vinifera), 5'ss of exon 12
GAGTTGGGAATGATCCCAGAGAAGATCGTTATTTCAGCATCCCAAAACAAgtaagtagttataaggagtttcaatgattcacaaatacatgattaaacca------gagagatcctcaccttcactaacaaatgctataactgtaaaaatagtgtg
| ||||||||||| || ||||||||||| ||||||||||||||||| ||||||||| ||| | || || || |||| | || ||| |||| || ||||| | | | | | |||| |||| | |
GTGTTGGGAATGACCCAAGAGAAGATCGCTATTTCAGCATCCCAAAGCAAgtaagtgcactcaagta--ttaaactgctctgaaatttaattctagacctcattgtgagaaggccaaacctttaattagtta-acaataaatgtaggtttgga---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14990988|gb|BI316661.1|BI316661EST: GAGTTGGGAATGATCCCAGAGAAGATCGTTATTTCAGCATCCCAAAACAA GCACAAACGTATGACCCTGAAGGTGAGTATGTTGCATACTGGTTGCC
genomic: GAGTTGGGAATGATCCCAGAGAAGATCGTTATTTCAGCATCCCAAAACAAgtaagtagtt ... attttttcagGCACAAACGTATGACCCTGAAGGTGAGTATGTTGCATACTGGTTGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGTTGGGAATGATCCCAGAGAAGATCGTTATTTCAGCATCCCAAAACAAgtaagtagttataaggagtttcaatgattcacaaatacatgattaaaccagagagatcctcaccttcactaacaaatgctataactgtaaaaatagtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcacc