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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGgtaacttcctatcccttttccaaataagtaacattcatgctagtatcaaagtcgttatattcctataagaatttttgtataccaattttggcattattga...

Basic information

species Glycine max
transcript GLYMA03G40000.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40000.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G108416_T01 (Zea mays), 5'ss of exon 12
GTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGgtaacttcctatcccttttccaaataagtaacattcatgctagtat-caaagtcgttatattcctata-agaatttttgtataccaattttggcattattga
||  | ||||| |||||||||||||||||||||||||||||| | || |||||||     ||  ||     ||   |     |  ||        | | ||    |  |    ||  | | | |   |||   | |||   | |   |||||  
GTGACATCTGGAATGAGTCCAGCTTTCAATCTTTATGGGTGTGCCTTGATTGgtattcatcttcccacccacctttttttctatttttgcatccttgtgcatctcctcttcgatcgcacacaaagcattttctttccaccatggattttatt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205448|gb|BU964701.1|BU964701
EST:     TTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTG                         TGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTC
genomic: TTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGgtaacttcct ... caatatgcagTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTC
EST: gi|17021927|gb|BM092961.1|BM092961
EST:     TTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTG                         TGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTC
genomic: TTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGgtaacttcct ... caatatgcagTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTC
EST: gi|6724770|gb|AW309169.1|AW309169
EST:     TTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTG                         TGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTC
genomic: TTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGgtaacttcct ... caatatgcagTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTC