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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTCAATTGCCTGAGGGCATAACTGAATTGTGGCATCATGACAAATTGTCTGTGCCCTTGgtatgtattcagaacttcattaaagaaaattgtttccttatatgccattcaccagagattgactttcacattaaggagaaactgggaatttttttgtacatttatttgttgtgatcaactcctacaatataatgaaaatattgaagcaatactggttttaactgtttgaaataattactgttttttttgcag

Basic information

species Glycine max
transcript GLYMA03G34140.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34140.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv08s0007g04980.t01 (Vitis vinifera), 5'ss of exon 13
ATGGCTCAATTGCCTGAGGGCATAACTGAATTGTGGCATCATGACAAATTGTCTGTGCCCTTGgtatgtattcagaacttcattaaagaaaattgtttccttatatgccattcaccagagattgactttcacattaaggagaa-actgggaatttttttgtacatttatttgttgtgatcaactcctacaatataatgaaaatattgaagcaatactggttttaactgtttgaaataattactgttttttttgcag
|||||||||||||||||||| || ||||||||   ||||||||| ||  |||||||||| ||||||||| ||   | || |   | | ||  || ||   || | ||           || ||  |||   | ||  | |  | |||| |        || | ||                                                                                           
ATGGCTCAATTGCCTGAGGGTATTACTGAATTACTGCATCATGAAAAGCTGTCTGTGCCTTTGgtatgtgttagaagctgccacatataacctt-ttcaattttttggtgaatttgttaggttcccttgagctttctgcaacatactgaggcagcaactgca-at-------------------------------------------------------------------------------------------