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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGGTCTACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCTCGTCGCCTATTTTCATCCTTTGACCCTGCGATTCAACGGgtatacacttatgattttgtggatgtcattcttccttttatttttgttgctcaggtcatcttttaaagtgaatgtaaatcgcag

Basic information

species Glycine max
transcript GLYMA03G32710.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32710.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G20190.1 (Arabidopsis thaliana), 5'ss of exon 12
GTACGGTCTACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCTCGTCGCCTATTTTCATCCTTTGACCCTGCGATTCAACGGgtatacacttatgattttgtggatgtcattcttccttttatttttgttgctcaggtcatcttttaaagtgaatgtaaatcgcag
|| ||| | ||||| || |||||||||||||||||||||||||||||||| || |||||||| ||  | ||||| |||||||||||||  |||||| |||||     ||   | | | |  || |  | |||  | | ||   ||  |||      | | ||  |  ||     |        
GTGCGGGCAACTGCTAGAATGTGCTACAGAATGTTTGCAAAAACTTGGCCGGATCGTTCTCGCCGGTTGTTTTCGTCCTTTGACCCTGTCATTCAAAGGgtaaggcttttcaactctct--atattctgcttattatcatcaatgaggcttgataaagcattccatatgttctcag-------

upper sequence: GLYMA03G32710.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 9
GTACGGTCTACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCTCGTCGCCTATTTTCATCCTTTGACCCTGCGATTCAACGGgtatacacttatgattttgtggatgtcattcttccttttatttttgttgctcaggt-catcttttaaagtgaatgtaaatcgcag--
||| |    ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| |||||   | |||||| ||||  |||||| |||||||      |  | |     | |   |||||    | |||||   |  | |     |  | |||| |      |   |  ||   
GTAAGACTAACTGCCAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCCCGGCGCTTATTTGTGTGCTTTGATCCTGTTATTCAAAGGgtatatcggccttttctctccaaagaacttctttacctgattttatctattaatacataaatattaatgcagtcattttttacacag