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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTTCTATCTGCCACAGTGCTTTCTCTGATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCGgtgagtcaatggattcaacaagccatggtttcagattttccttgtggcattgtcaatgtcacgtaggtctaacaatatgttagctttgcttttcag

Basic information

species Glycine max
transcript GLYMA03G32580.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32580.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G20320.1 (Arabidopsis thaliana), 5'ss of exon 13
GGTGTTCTATCTGCCACAGTGCTTTCTCTGATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCGgtgagtcaatggattcaacaagccatggtttcagattttccttgtggcattgtcaatgtcacgtaggtctaacaatatgttagctttgcttttcag
|||||| | || || | ||| || |||||  | || |||||||| |||||||||||||||||||||||||| ||||| ||   |||   |||  |    |    ||  || || ||       |||||    ||  | | ||  ||||    |  |  || |  | |||||
GGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAGAGTTTATTGCTTCCGgtaagc--atgacatcattagaaaaacaatt--gacttacc----aaaattgta---gtttccttggcgtaac----ttctctctgttgtcttcag

upper sequence: GLYMA03G32580.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv07s0005g04510.t01 (Vitis vinifera), 5'ss of exon 11
GGTGTTCTATCTGCCACAGTGCTTTCTCTGATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCGgtgagtc-aatggattcaacaagccatggtttcagattttccttgtggcattgtcaatgtcacgta-ggtctaacaatatgttagctttg-cttttcag-
||||||||||| ||||||||| | ||||| ||||||||||||||||||||| | |||||||| |||||||| || || |||   |  |  |    ||  ||  | ||    |||   |||     || |  ||   | ||| |   |   | |    ||  | |  | ||  || 
GGTGTTCTATCGGCCACAGTGTTATCTCTTATTCCCATGATTCGTCCATTTGAATGGCAGAGCTTATTGCTTCCTgtaagtttgacagcattctgaaatcactggtttttttttagtttgaaatttttttgataatatgtatgaaattttagtgccatacatataacattgtaga