1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTTATACAAATGCGAATGACATGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAGgttttattttatgatctctatcaaagtcctctgttttattagttattggcatatccatttgttcttaatctattttgtggacactttacag
species | Glycine max |
transcript | GLYMA03G27460.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAG GCTNTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACANGAAGCEST: gi|6134767|gb|AW133160.1|AW133160
genomic: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAGgttttatttt ... cactttacagGCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGCEST: gi|9819826|gb|BE555402.1|BE555402
genomic: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAGgttttatttt ... cactttacagGCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGCEST: gi|19348102|gb|BM892634.1|BM892634
genomic: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAGgttttatttt ... cactttacagGCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGCEST: gi|9899023|gb|BE607991.1|BE607991
genomic: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAGgttttatttt ... cactttacagGCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: CATCTCGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGCEST: gi|9819476|gb|BE554989.1|BE554989
genomic: CATCTCGAAATGGTCCAAAGgttttatttt ... cactttacagGCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGCTAATGCATNTGATCATACATCTCGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGCEST: gi|6071989|gb|AW101436.1|AW101436
genomic: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAGgttttatttt ... cactttacagGCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGNGACAGGAAGCEST: gi|22523744|gb|BU082555.1|BU082555
genomic: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAGgttttatttt ... cactttacagGCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGCEST: gi|51335508|gb|CO979374.1|CO979374
genomic: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAGgttttatttt ... cactttacagGCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGNNAATGCATTTGATCATACATCTCGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGNEST: gi|21600500|gb|BQ610831.1|BQ610831
genomic: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAGgttttatttt ... cactttacagGCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGCEST: gi|27424547|gb|CA936067.1|CA936067
genomic: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAGgttttatttt ... cactttacagGCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGC
genomic: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAGgttttatttt ... cactttacagGCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTATACAAATGCGAATGACATGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAGgttttattttatgatctctatcaaagtcctctgttttattagttattggcatatccatttgttcttaatctattttgtggacactttacag
- - - - - - - - - - - - - - - AGAGCT