1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTACCAGCCTCACTTAATTGCACCAGAGCAAGGTTACCGACGCCTCATTGAGGGAGCTCTCAGCTACTTTAGAGGTCCAGCTGAAGCTTCAGTTGATGCAgtaagtatatacctggttgtgctcttttgtttttttgttatttattttgaagctgccattaacagtttaaagttgtatttctatggtttggatgtag
species | Glycine max |
transcript | GLYMA03G24610.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGGGAGCTCTCAACTACTTTAGAGGTCCTTCTGAAGCTTCAGTTGATGCA GTTCACTTTGTCTTAAAAGAACTTGTGAGGAAATCAATAGCTGAAACTCAGEST: gi|151410998|gb|EV279984.1|EV279984
genomic: AGGGAGCTCTCAGCTACTTTAGAGGTCCAGCTGAAGCTTCAGTTGATGCAgtaagtatat ... ttggatgtagGTTCACTTTGTCTTAAAAGAACTTGTGAGGAAATCAATAGCTGAAACTCAG
EST: GGAGCTCTCAGCTACTTTAGAGGTCCAGCTGAAGCTTCAGTTGATGCA GTTCACTTTGTCTTAAAAGAACTTGTGAGGAAATCAATAGCTGAAACTCAG
genomic: GGAGCTCTCAGCTACTTTAGAGGTCCAGCTGAAGCTTCAGTTGATGCAgtaagtatat ... ttggatgtagGTTCACTTTGTCTTAAAAGAACTTGTGAGGAAATCAATAGCTGAAACTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACCAGCCTCACTTAATTGCACCAGAGCAAGGTTACCGACGCCTCATTGAGGGAGCTCTCAGCTACTTTAGAGGTCCAGCTGAAGCTTCAGTTGATGCAgtaagtatatacctggttgtgctcttttgtttttttgttatttattttgaagctgccattaacagtttaaagttgtatttctatggtttggatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC