1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ACACTCACAAGGTAAAGAGATTACTGATGCTGATATTCTAAACTGGGCAAACAATAAGGTGAAAAGAGCAGGAAGAACTTCTCAAATGGATAGTTTCAAGgtataaaaccatctattgagagttatgtatgtgtgtgtgcgtgcgcgcacttatatagttcttgctactcttaattttacattcatctataacaattatc...
species | Glycine max |
transcript | GLYMA02G47800.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGCAGGAAGAACTTCTCAAATGGATAGTTTCAAG GATAAGAATCTTTCCAGTGGCATTTTCTTCCTTGAGCTTTTGAGTGCAGTGEST: gi|51336658|gb|CO980524.1|CO980524
genomic: AGCAGGAAGAACTTCTCAAATGGATAGTTTCAAGgtataaaacc ... gcttcatcagGATAAGAATCTTTCCAGTGGCATTTTCTTCCTTGAGCTTTTGAGTGCAGTG
EST: ACAATAAGGTGAAAAGAGCAGGAAGAACTTCTCAAATGGATAGTTTCAAG GATAAGAATCTTTCCAGTGGCATTTTCTTCCTTGAGCTTTTGAGTGCAGTGEST: gi|22521801|gb|BU080612.1|BU080612
genomic: ACAATAAGGTGAAAAGAGCAGGAAGAACTTCTCAAATGGATAGTTTCAAGgtataaaacc ... gcttcatcagGATAAGAATCTTTCCAGTGGCATTTTCTTCCTTGAGCTTTTGAGTGCAGTG
EST: ACAATAAGGTGAAAAGAGCAGGAAGAACTTCTCCAATGGATAGTTTCAAG GATAAGAATCTTTCCAGTGGCATTTTCTTCCTTGAGCTCTTGAATGCAGCG
genomic: ACAATAAGGTGAAAAGAGCAGGAAGAACTTCTCAAATGGATAGTTTCAAGgtataaaacc ... gcttcatcagGATAAGAATCTTTCCAGTGGCATTTTCTTCCTTGAGCTTTTGAGTGCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACTCACAAGGTAAAGAGATTACTGATGCTGATATTCTAAACTGGGCAAACAATAAGGTGAAAAGAGCAGGAAGAACTTCTCAAATGGATAGTTTCAAGgtataaaaccatctattgagagttatgtatgtgtgtgtgcgtgcgcgcacttatatagttcttgctactcttaattttacattcatctataacaattatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC