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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgccaagcttctaagtttgttgactgttgtttattgttttggctgcttcattgtttcatatatgcatatacaaaaccacaaatatcttgaaccat...

Basic information

species Glycine max
transcript GLYMA02G46430.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46430.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv19s0090g01210.t01 (Vitis vinifera), 5'ss of exon 12
TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtt----tgtgccaagcttctaagtttgttgactgttgtt-tattgttttggctgcttcattgtttcatatatgcatatacaaaaccacaaatatcttgaaccat---------------------------------------------------
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TTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAGgttcgtctgttctaccctgttaaagtttgggcatgctgttgtcatttctcatttgggttattggcttattcctagctgtaagaaactgatcat-cattgaacaaaaaggaatggaaagcatgtataacttttttctttttcttccacattgtatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13479488|gb|BG508831.1|BG508831
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|31461278|gb|CD403306.1|CD403306
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|13481810|gb|BG511153.1|BG511153
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|31464295|gb|CD406323.1|CD406323
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|21676387|gb|BQ628738.1|BQ628738
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT