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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAAgtaagagcttgtgtagtcaaacttccgtttttttaatcttttgaatctttcacaacctggtccggtgaaatctaacctatattgggctctatggtgcag

Basic information

species Glycine max
transcript GLYMA02G46350.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46350.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 12
CATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAAgtaagagcttgtgtagtcaaacttccgtttttttaatcttttgaatctttcacaacctggtccggtgaaatctaacctatattgggctctatggtgcag-----------------------------------------------------------------------------------------------
|||||||||||||||||| ||||| ||    ||  |    ||||||||||| ||||| ||  | ||| ||||||| ||||||||||||||| | |||||||| || | |  ||   ||    ||    | |  |||  | ||  || ||   |  | |  | |   | ||   ||   ||   | |   || |   ||                                                                                                
CATCAGTGATGAGTTCAAGCGTGTAATTGGGTCACTCAAAGGGCATGATGATAAAATACGTATAGTTCTGAACAAAGCAGACCAAGTTGATGCACAACAAgtgagtgttattgctatccc-tttatagtgtgataacatattccattttcatcctctttatgcataggaaaaaaaatcatggagtgtgataagaaacattgatttgttttttacatttcaagtggagacaaaaaagagtagctatgttgattgaaagcaaataacgactttgcttctgacaaatttatcctcag

upper sequence: GLYMA02G46350.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 5'ss of exon 12
CATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAAgt--------aagagcttgtgtagtca--aacttccgtttt-tttaatcttttgaatctttcaca-------acctggtccggtgaaatctaac-ctatattgggctctatggtgcag--
  | |||||||||||||| ||||| || ||||| ||||| || ||||||||||| ||||| || ||| |||| ||||| |||||||| || || || || ||         |   | ||    || |   | |    |||  ||   |||||   |  | |  ||       || || ||   |  | | | || |  | ||   |  |||  || |   
TGTAAGTGATGAGTTCAAGCGTGTAATTTCATCTTTACGCGGTCATGATGACAAGATCCGCGTTGTTCTGAATAAGGCTGACCAAGTGGACACTCAGCAGgttgaccattgacgccctgatcggttatcgattcttatttcgttccttctttcacacttctttcattgttttacatgttcttatacatttttacaccgtctttctccttatcttgtatag

upper sequence: GLYMA02G46350.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 12
CATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAAgtaagagcttgtgtagtcaaacttccgtttttttaatcttttgaatctttcacaacctg-----gtccggtgaaatctaacctatattgg----gctctatggtgcag------------
  | |||||||| ||||| |||||||| |||||  | |  || ||||||||||| || || |||||| |||||||||| |||||||| ||||| || |||||||||  |||||  |  ||       | |   | || || |  || |||||| || |      ||   |||   | | ||  | |||      ||| | || |                
TGTTAGTGATGAATTCAAGCGTGTGATTTCATCTCTTCATGGCCATGATGACAAGATACGTGTGGTTCTGAACAAGGCGGACCAAGTGGATACTCAGCAAgtaagaatttgtgctgctaattagttttataggttattttatagatatttcactacatattattgtttagtgtcttttgacagacatttaacttgctttctgattggctttgtattgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193638481|gb|FK585477.1|FK585477
EST:     ACAAAATCCGAGTGGTTTTGATCAAGGCAGACCAAGTTGATACCCAACAA                         TTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
genomic: ACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAAgtaagagctt ... tatggtgcagTTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
EST: gi|208117483|gb|GD917725.1|GD917725
EST:     ACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAA                         TTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
genomic: ACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAAgtaagagctt ... tatggtgcagTTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
EST: gi|51343198|gb|CO983931.1|CO983931
EST:     ACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAA                         TTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
genomic: ACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAAgtaagagctt ... tatggtgcagTTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
EST: gi|192313377|gb|FK005149.1|FK005149
EST:     ACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAA                         TTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
genomic: ACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAAgtaagagctt ... tatggtgcagTTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
EST: gi|13481375|gb|BG510718.1|BG510718
EST:     ACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAA                         TTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
genomic: ACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAAgtaagagctt ... tatggtgcagTTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
EST: gi|193655266|gb|FK599692.1|FK599692
EST:     ACAAAATCCGAGTGGTTTTGATCAAGGCAGACCAAGTTGATACCCAACAA                         TTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
genomic: ACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAAgtaagagctt ... tatggtgcagTTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
EST: gi|192313376|gb|FK005148.1|FK005148
EST:     ACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAA                         TTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG
genomic: ACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAAgtaagagctt ... tatggtgcagTTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAG