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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTAAACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgtaatatgtttatgcacaattttttattgacataaccagttgaattttttgagggttgagaattcactgatgacattataatcattcagctt...

Basic information

species Glycine max
transcript GLYMA02G45610.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45610.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os05g29010.2 (Oryza sativa), 5'ss of exon 12
GTTTCTAAACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgtaatatgtttatgcacaattttttattgacataaccagttgaattttttgagggttgagaat-tcactgatgacatt--ataatcattcagctt-
|||||||| || |||||||||||||| |||||||| |||||  |||| || || |||||| ||     | ||| |||   |  | ||||| ||  | || |        | || ||     | || | | |   || || |  |   |    || ||  |  
GTTTCTAAGCACATGAATCATTTGCTGAAAGCACCCTTTTGCATACACCCGAAGACAGgttagacccaagtatattt---cctattttttcatcta-atgaatgaagatacttgtttgcactagaaactgtttttgttggctgtccgtgtgtatacacttcg

upper sequence: GLYMA02G45610.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G41880.1 (Arabidopsis thaliana), 5'ss of exon 13
GTTTCTAAACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgtaatatgtttatgcacaattttttattgacataaccagttgaattttttgagggttgagaattcactgatgacattataatcattcagctt
||||| ||||| ||||| ||||||||||| ||||| || || || ||||| ||||||||||    | | || ||||| |  |  || |  ||   |  |||  | |   || ||   |        |||  |   |||   |  |  |  |||||   
GTTTCAAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGgtc--cctttcat-tgtttcttgaatatatcctacc-aggtaattactctcatattcatacttagttcaatgtatgaatgttgtc-tggtt-ttcag---

upper sequence: GLYMA02G45610.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv02s0025g01350.t01 (Vitis vinifera), 5'ss of exon 12
GTTTCTAAACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgtaatatgtttatgcacaattttttattgacataaccagt-tgaattttttgagggttgagaattcactgatgacattataatcattcagctt
||||| ||||| ||||| |||||||| || |||||||||||||| || || ||||||||| ||  |  |  || ||| |     ||    |||  | |||     | ||      |      ||| ||| |   |      |  ||||   || |    
GTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCAAAAACAGgttagggtccagaatatttgttacttatgaaatatgaatatacatgatgtgggaaaatctgttattgggaagtttttctgtttagcataacgcttgaaaa-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208220404|gb|GE019836.1|GE019836
EST:     ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAG                         GTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
genomic: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgt ... tttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
EST: gi|193359948|gb|FK326720.1|FK326720
EST:     ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAG                         GTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
genomic: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgt ... tttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
EST: gi|298181814|gb|HO025989.1|HO025989
EST:     ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAG                         GTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
genomic: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgt ... tttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
EST: gi|151404405|gb|EV274215.1|EV274215
EST:     ACATATGCATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAG                         GTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
genomic: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgt ... tttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
EST: gi|58023254|gb|CX709995.1|CX709995
EST:     ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAG                         GTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
genomic: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgt ... tttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA