1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGATATTATCATCCTTAATCCAAATTCGAGCTTTGAGATGAGTGCAAAGTCCCACCACTCCAGACTGGACACAAATGTCTATGAGGGAAGAAGAGGAAAGgtactggtttaattataatctattccttatgccttgtttgtgtcctatggttctgttcaacatgtggttgtttgtatattgttcaacaattgaagccttggcatgcaatatcaagattcagagtcttttttttctctctctaatttttctcag
species | Glycine max |
transcript | GLYMA02G44690.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCCACCACTCCAGACTGGACACAAATGTCTATGAGGGAAGAAGAGGAAAG GGAAAAATTGAAGTGACTATTGTGGGAGGAAGAGTTGTTTGGGAAAATAATEST: gi|120496721|gb|EH224888.1|EH224888
genomic: CCCACCACTCCAGACTGGACACAAATGTCTATGAGGGAAGAAGAGGAAAGgtactggttt ... tttttctcagGGAAAAATTGAAGTGACTATTGTGGGAGGAAGAGTTGTTTGGGAAAATAAT
EST: CCCACCACTCCAGACTGGACACAAATGTCTATGAGGGAAGAAGAGGAAAG GGAAAAATTGAAGTGACTATTGTGGGAGGAAGAGTTGTTTGGGAAAATAATEST: gi|22929708|gb|BU546847.1|BU546847
genomic: CCCACCACTCCAGACTGGACACAAATGTCTATGAGGGAAGAAGAGGAAAGgtactggttt ... tttttctcagGGAAAAATTGAAGTGACTATTGTGGGAGGAAGAGTTGTTTGGGAAAATAAT
EST: CCCACCACTCCAGACTGGACACAAATGTCTATGAGGGAAGAAGAGGAAAG GGAAAAATTGAAGTGACTATTGTGGGAGGAAGAGTTGTTTGGGAAAATAATEST: gi|21256999|gb|BQ453887.1|BQ453887
genomic: CCCACCACTCCAGACTGGACACAAATGTCTATGAGGGAAGAAGAGGAAAGgtactggttt ... tttttctcagGGAAAAATTGAAGTGACTATTGTGGGAGGAAGAGTTGTTTGGGAAAATAAT
EST: CCCACCACTCCAGACTGGACACAAATGTCTATGAGGGAAGAAGAGGAAAG GGAAAAATTGAAGTGACTATTGTGGGAGGAAGAGTTGTTTGGGAAAATAATEST: gi|14991273|gb|BI316946.1|BI316946
genomic: CCCACCACTCCAGACTGGACACAAATGTCTATGAGGGAAGAAGAGGAAAGgtactggttt ... tttttctcagGGAAAAATTGAAGTGACTATTGTGGGAGGAAGAGTTGTTTGGGAAAATAAT
EST: CCCACCACTCCAGACTGGACACAAATGTCTATGAGGGAAGAAGAGGAAAG GGAAAAATTGAAGTGACTATTGTGGGAGGAAGAGTTGTTTGGGAAAATAAT
genomic: CCCACCACTCCAGACTGGACACAAATGTCTATGAGGGAAGAAGAGGAAAGgtactggttt ... tttttctcagGGAAAAATTGAAGTGACTATTGTGGGAGGAAGAGTTGTTTGGGAAAATAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATATTATCATCCTTAATCCAAATTCGAGCTTTGAGATGAGTGCAAAGTCCCACCACTCCAGACTGGACACAAATGTCTATGAGGGAAGAAGAGGAAAGgtactggtttaattataatctattccttatgccttgtttgtgtcctatggttctgttcaacatgtggttgtttgtatattgttcaacaattgaagccttggcatgcaatatcaagattcagagtcttttttttctctctctaatttttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA