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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGCCATGCAAATGAGAAAAACTTTGTTGGTCTTACAGTAAGCAGTGAATATATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTTTACCACAAGgtttgtggttttcaattatgtgtcgttttcttgtgcatttaccttttatttatggtactgaggattcaagtgcccttccttttcag

Basic information

species Glycine max
transcript GLYMA02G43540.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43540.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G126795_T02 (Zea mays), 5'ss of exon 14
CAAAGGCCATGCAAATGAGAAAAACTTTGTTGGTCTTACAGTAAGCAGTGAATATATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTTTACCACAAGgt--ttgtg-gttttcaattatgtgtcgttttcttgt-gcatttaccttt--tatttatggtac----tgaggattcaagtgcccttcct-tttcag-----------
|| ||| ||   |||||| || ||||| |||||  |  | || | || ||| |||||||| ||||| |||||||||||||| || |||||||| ||||||||  | |   | ||     |  || | |||  | ||  ||||  |   ||   || | || | |    |||  | | |  ||   | |    ||||            
CAGAGGGCACAAAAATGAAAAGAACTTCGTTGGATTGTCTGTGAACAATGAGTATATTGCTTGTGGAAGTGAAACAAATGAGGTTTTTGTTTATCACAAGgtaatcgcaagcttctggcttggtcttgttcccgtgcagcatgcattgttacgatgtgtgattcaccttgatcagtaagatgtgttcctaacttcacactggttgcag

upper sequence: GLYMA02G43540.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G104920_T03 (Zea mays), 5'ss of exon 12
CAAAGGCCATGCAAATGAGAAAAACTTTGTTGGTCTTACAGTAAGCAGTGAATATATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTTTACCACAAGgt--ttgtggttttcaattatgtgtcgttttcttgtgca-tttacctt-ttatt-tatggtactgaggat------tcaagtgcccttccttttcag------------
|| ||| ||   |||||| || |||||||||||  |  | || | || |||||||||||| ||||| ||||| |||||||| || |||||||| ||||||||  | |     |||  |  || ||| | |||   ||||   | | || ||||  | ||  ||| |  ||      |||  ||   | |    ||              
CAGAGGACACAAAAATGAAAAGAACTTTGTTGGCTTGTCTGTGAACAATGAATATATTGCTTGTGGAAGTGAGACAAATGAGGTTTTTGTTTATCACAAGgtaatggcaagcttctgtcctg-gtcatgttcccatgcagcatgcattgttatgatgtgtgactcaatataatcaatcagatgggttcctaactctacactgattgcag

upper sequence: GLYMA02G43540.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 5'ss of exon 12
CAAAGGCCATGCAAATGAGAAAAACTTTGTTGGTCTTACAGTAAGCAGTGAATATATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTTTACCACAAGgtttgtggttttcaattatgtgtcgttttcttgtgcatttaccttttatttatggtactgaggattcaagtgcccttccttttcag------------------
|| ||| ||  | |||||||| ||||| || || ||  | |||| ||||||||||||| | ||||||||||||||||| || ||||| || ||||| |||||| || ||     ||  |    |      || |     | | ||||| | ||  |||| || || ||  ||    |  || |  |                  
CAGAGGACACACTAATGAGAAGAACTTCGTGGGCCTCTCTGTAAACAGTGAATATATTTCTTGTGGCAGTGAAACAAACGACGTCTTCGTCTACCATAAGgttagtagtacctgatcttaaaacagccaatttt---catgcattttact-attatactaagaatccatttgatagtaattctaggaaacgcttttactatttt

upper sequence: GLYMA02G43540.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S264_64V6.1 (Physcomitrella patens), 5'ss of exon 13
CAAAGGCCATGCAAATGAGAAAAACTTTGTTGGTCTTACAGTAAGCAGTGAATATATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTTTACCACAAGgtttgtggttttcaattatgtgtcgttttcttgtgcatttacctttta----tttatggtactgagga-ttcaagtgcccttccttttcag------------
 | ||| ||| | || || || || |||||||| ||  | || | |||||||||||| |  ||||| |||| ||||||||| || |||||||||||||||||       |||   || ||| | ||  |  ||  ||||    |  |      || || |  | |  | |||||||   ||||  |||  |            
GAGAGGACATACCAACGAAAAGAATTTTGTTGGGCTATCTGTTAACAGTGAATATATAGGTTGTGGTAGTGTAACAAATGAGGTGTTTGTTTACCACAAGgta---acgttttgtttctgtttagtactagtgcacattgtgatcgtggaatcttttgttttttacaacttcaagtaaacttctgtttatgacctttgcttgt

upper sequence: GLYMA02G43540.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S86_153V6.1 (Physcomitrella patens), 5'ss of exon 12
CAAAGGCCATGCAAATGAGAAAAACTTTGTTGGTCTTACAGTAAGCAGTGAATATATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTTTACCACAAGgt--ttgtggttttcaattatgtgtcgttttcttgtgcatttaccttttat--ttatggtactgaggat-tcaagtgcccttccttttcag----------
 ||||| ||  | ||||| || || |||||||| ||||| || | |||||| ||||| || ||||||||||||||||| || || ||||| || ||||||||     |    || ||    ||||   | | ||||| | || |  |  ||   ||| | |||  |||| ||||  |        ||   |          
AAAAGGTCACACCAATGAAAAGAATTTTGTTGGACTTACTGTCAACAGTGAGTATATCGCCTGTGGCAGTGAAACAAACGAGGTGTTTGTGTATCACAAGgtaacattctgcttgaacagagtgttaatattttgtg-acttgctgtggatgactattggactttggatgtcaaaaggaaaggacttaaggtgaatttttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193371212|gb|FK337747.1|FK337747
EST:     AGTGAAACAAATGAAGTCTTTGTTTACCACAAG                         GAAATCTCGAGACCTTTGACTTCGCACAGATTTGGGTCCCCTGATATGGAT
genomic: AGTGAAACAAATGAAGTCTTTGTTTACCACAAGgtttgtggtt ... tccttttcagGAAATCTCGAGACCTTTGACTTCGCACAGATTTGGGTCCCCTGATATGGAT
EST: gi|10845545|gb|BF068639.1|BF068639
EST:     AATATATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTTTACCACAAG                         GAAATCTCGAGACCTTTGACTTCGCACAGATTTGGGTCCCCTGATATGGAT
genomic: AATATATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTTTACCACAAGgtttgtggtt ... tccttttcagGAAATCTCGAGACCTTTGACTTCGCACAGATTTGGGTCCCCTGATATGGAT