Sequence
atgc intronic sequence ATGC exonic sequenceAGTTTGTTAGAGAAAGGCTACGAACTTGTATCTGGTGGAACTGACAACCATTTAGTGTTAGTGAACTTAAGAAACAAGgtaaatgatgtgatccttttctctgaaaatttcttggttataatttttctcaaaagaaacccagatagtgccaaattgtttttacatgtcaaatagacct...
Basic information
species | Glycine max |
transcript | GLYMA02G38160.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 12
AGTTTGTTAGAGAAAGGCTACGAACTTGTATCTGGTGGAACTGACAACCATTTAGTGTTAGTGAACTTAAGAAACAAGgtaa-atgatgtgatccttttctctgaaaatttcttggt--tataatttttctcaaaagaaacccagat-agtgccaaattgtttttacatgtcaaatagacct
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AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaacatgtgggacgctttgggtgttttgagatattttagttctatctttcagtttctcttatgagtgc----tcaccaataaactttcagctgcttc
upper sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 12
AGTTTGTTAGAGAAAGGCTACGAACTTGTATCTGGTGGAACTGACAACCATTTAGTGTTAGTGAACTTAAGAAACAAGgtaa----atgatgtgatccttttctctgaaaatttcttggttataatttttctcaaaagaaacccagatagtgccaaattgtttttacatgtcaaatagacct
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AGTCTGTTAGAGAAAGGCTATGAACTTGTATCTGGCGGAACTGATAACCATTTAGTCTTGGTGAATTTGAAAAACAAGgtaataggagaatgttccttcttgctttggcatcattttgcttctgcaagtttt---aagtttctccccttcagaaatattatcttttaaccctatatagagg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16343418|gb|BI969013.1|BI969013EST: TATCTGGTGGAACTGACAACCATTTAGTGTTAGTGAACTTAAGAAACAAG GGCATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
genomic: TATCTGGTGGAACTGACAACCATTTAGTGTTAGTGAACTTAAGAAACAAGgtaaatgatg ... tgtttgacagGGCATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTTGTTAGAGAAAGGCTACGAACTTGTATCTGGTGGAACTGACAACCATTTAGTGTTAGTGAACTTAAGAAACAAGgtaaatgatgtgatccttttctctgaaaatttcttggttataatttttctcaaaagaaacccagatagtgccaaattgtttttacatgtcaaatagacct
- - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA