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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGTGCATCAGATGAGACATACACAGCAGAGAGTATTGCACTTATTCGAATTTCTGGAACTTCTATTCATAACAATAAATCAGTACAAGTTGATGCAgtatgtacccatgaaaatattcctttttttttccctctacaagtatgttggtagggcttatattttatttctagcccttcatacttaagttattcttattcag

Basic information

species Glycine max
transcript GLYMA02G32100.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G32100.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g24220.2 (Oryza sativa), 5'ss of exon 14
CAAAGGTGCATCAGATGAGACATACACAGCAGAGAGTATTGCACTTATTCGAATTTCTGGAACTTCTATTCATAACAATAAATCAGTACAAGTTGATGCAgta---tgtacccatgaaaatattcctttttttttccctctacaagtatgttggtagggcttatattttatttctagcccttcatacttaagttattcttattcag
 || ||       ||||| |||||  | |  ||  | ||||| ||| |||||||||||||||| || ||||| |||||||||    | ||||||||||| |||   | ||||  |      ||  || |   | |     | |||  ||| |  ||  | |  |  |||   | ||    |||| | |   ||  ||  || |   
AAAGGGCTTGAAGGATGAAACATATTCTGGCGATGGCATTGCTCTTTTTCGAATTTCTGGAACATCAATTCACAACAATAAAGTGCTTCAAGTTGATGCGgtaatatttacctctcctgcaatggctgtgcctatgaagattcaa-catgataatattgttggtggttt---tgtatgttttcaaaat--ggtactttataatagc

upper sequence: GLYMA02G32100.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 13
CAAAGGTGCATCAGATGAGACATACACAGCAGAGAGTATTGCACTTATTCGAATTTCTGGAACTTCTATTCATAACAATAAATCAGTACAAGTTGATGCAgtatgtacc-catgaaaatattcctttttt---tttccctctacaa---gtatgttggtagggcttatattttatttctagcccttcatacttaagttattcttattcag
 ||||||      ||||| || ||||| || ||  ||||||| ||  |||| || |||||||||||| | |||||||| |||  ||| ||||||||||| |||||||||   ||     || |    |     |  |  | || |    ||||||| || |  |||| |   | ||||    | || ||||||||   |           
TAAAGGTCTGAACGATGAAACCTACACTGCTGATTGTATTGCTCTCCTTCGGATATCTGGAACTTCTGTGCATAACAACAAAGTAGTGCAAGTTGATGCGgtatgtaccatttgtggccatacagaatcagaatagcattttatattctgtatgttagttgt-cttaaaccctttttccgatcgtt-atacttaacacacca--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317832|gb|FK010194.1|FK010194
EST:     GAATTTCTGGAACTTCTATTCATAACAATAAATCAGTACAAGTTGATGCA                         GTGCCATCATCATTGAATTCTACTGAGTGTTTTGTCCTGCAATCTGGCTCT
genomic: GAATTTCTGGAACTTCTATTCATAACAATAAATCAGTACAAGTTGATGCAgtatgtaccc ... tcttattcagGTGCCATCATCATTGAATTCTACTGAGTGTTTTGTCCTGCAATCTGGCTCT