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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACCAGACCTAGGTTGGATGAGAAGATTACAACAAATACTTGGACGGAAGCACCAGCACAACCTGCATgtatgcaacatttctgtttccttaaatgtattactgtatgcctttgtagtctttgttctgatctctcaaatctcatcatatgtacag

Basic information

species Glycine max
transcript GLYMA02G12670.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G12670.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 11
GCAACCAGACCTAGGTTGGATGAGAAGATTACAACAAATACTTGGACGGAAGCACCAGCACAACCTGCATgtatgcaaca----tttctgtttccttaaatgtattactgtatgcctttgtagtctttgttctgatctctcaaatctcatcatatgtacag
 ||||| ||  | || |||||||| |||||||| ||||||||||| ||||| |||||||  ||||| |||||||||   |    ||| |    || |   |  | |     |  |   || | |||| | |||||| ||    | |||  |   |||| ||
CCAACCGGATTTGGGATGGATGAGGAGATTACAGCAAATACTTGGTCGGAAACACCAGCGTAACCTTCATgtatgctctaccaatttattccaccctgtttagaatcacacacacacatgcaatcttagatctgatttc----acctctac---tgtatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19347220|gb|BM892100.1|BM892100
EST:     TGAGAAGATTACAACAAATACTTGGACGGAAGCACCAGCACAACCTGCAT                         GCAATATATGTCCTCCACCCAACCCTTGGACTAAAATTGACAGTATTGGCA
genomic: TGAGAAGATTACAACAAATACTTGGACGGAAGCACCAGCACAACCTGCATgtatgcaaca ... atatgtacagGCAATATATGTCCTCCACCCAACCCTTGGACTAAAATTGACAGTATTGGCA
EST: gi|193697091|gb|FK638905.1|FK638905
EST:     TGAGAAGATTACAACAAATACTTGGACGGAAGCACCAGCACAACCTGCAT                         GCAATATATGTCCTCCACCCAACCCTTGGACTAAAATTGACAGTATTGGCA
genomic: TGAGAAGATTACAACAAATACTTGGACGGAAGCACCAGCACAACCTGCATgtatgcaaca ... atatgtacagGCAATATATGTCCTCCACCCAACCCTTGGACTAAAATTGACAGTATTGGCA