Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGGgtgagtacaaggtgattttttttgttagtaagggtgcatcataagttgttcatattttgatgcataaacttagtgaagctgaaatctttatctggttgtg...

Basic information

species Glycine max
transcript GLYMA02G10590.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G068212_T01 (Zea mays), 5'ss of exon 12
CATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGGgtgagtaca-aggtgattttttttgttagtaagggtgcatcataagttgttcat-attttgatgcataaact--tagtgaagctgaaatctttatctggttgtg
||| || ||||||  | | ||||||||||||||  || | ||| | || ||    |  ||||||||  |  |||| |||||||||||||||||||||||||| |   || | || || | ||||          ||  ||||||  ||  || |  |  |||   | | | |  |  |  |  || | | ||| |||  ||   
CATCTTCTTGTGGGCTATTGATAAGAAAGATTTCTTTTTATGGGCAATCACATTTATCACAACATTAGTTTTTGGCATTGAGATTGGCGTCCTTGTTGGGgtaaaatcacaagtcatctattttt--------agtttatcatagttttatcgttgtcatgaaagaaacattccttttttaattgtattatttttctttttag-

upper sequence: GLYMA02G10590.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G13550.1 (Arabidopsis thaliana), 5'ss of exon 12
CATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGGgtgagtaca-aggtgattttttttgttagtaagggtgcatcataagttgttcatattttgatgcataaacttagtgaagctgaaatctttatctggttgtg--------
 |||||  | |||||||| || ||||  ||||||   ||||||||||| |||||||| | |||||||||| | || || ||||| || ||||||||||| |||||||   || |  | |  | ||||   |    |  | | |||  | |  ||  |||  ||||||  | |       || |     ||     ||| |         
TATTTTCCTCTGGCGTGTGGACAAGAGGGATTTTTCGCTTTGGACCATCACTAGCACCATAACATTGTTCTTCGGAATAGAGATCGGTGTCCTTGTTGGTgtgagtattcagatactatagtatgttcagattcatctaac-taatgtatatatgatttc-tgcataggcctctaaggactcacgcagttgcaatgttttcaattttag

upper sequence: GLYMA02G10590.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G12520.2 (Arabidopsis thaliana), 5'ss of exon 13
CATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGGgtgagta----caaggtgatttt-ttttgttagtaagggtgcatcataagttgttcatattttgatgcataaacttagtgaagctgaaatctttatctggttgtg-----------------------------------------------------
 || ||| |||||||||| || |||| |||||||  |||||||||||| |||||||| || || |||||| |||| || |||||||| |||||  |||| |||||||    ||   | | |    ||| ||  |   | || ||||||  |  || | |||   | |  | |   |  ||||  |   ||    | ||   ||                                                       
AATCTTTCTGTGGCGTGTGGACAAGAGAGATTTTACTCTTTGGACCATCACTAGCACCACCACTTTGTTCTTTGGAATAGAGATTGGGGTCCTCATTGGTgtgagtatgctcatactcactcagctttatttctgtagctg-atcatatctctttgaaattaaaaggagtgatgatgttgaaagtagtataaccacctacatgaattgtgcaacgcttttaaaggactcacagagttgtaatgcttggaatttttcag

upper sequence: GLYMA02G10590.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 12
CATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGGgtgagtacaaggtgattttttttgttagtaagggtgcatcataag-ttgttcatattttgatgcat---aaacttagtgaagctgaaatctttatctggttgtg-
 |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||  |||||||||||||||||||||||||| |||||||||||||| || ||          ||| || || |    |   |  ||||| ||| ||||  |   |  |||   ||| ||     || |   ||    || |   | || 
TATTTTTTTATGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCCTTACCAGCACTATGACATTGTTCCTTGGTATTGAGATTGGTGTCCTTGTTGGGgtaagaacttaa-agcagtttatgctaat----gcctactataagattgatcattatccaacacatgtgaaattttcatgagttattattcagatatccctttga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335397|gb|CO979263.1|CO979263
EST:     CTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGG                         GTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATT
genomic: CTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGGgtgagtacaa ... gaaattgtagGTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATT