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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATACCAAAATTTGATTACACGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtgctagcatgatgtgctttgtgtcattacatttgttttgttttttaattttttccaataaatcaatagtgataatttctgttaacttgttttgcc...

Basic information

species Glycine max
transcript GLYMA02G07370.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07370.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g70390.1 (Oryza sativa), 5'ss of exon 12
CCAATACCAAAATTTGATTACACGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtgctagcatgatgtgctttgtgtcattacatttgttttgttttttaattttttccaataaatcaatagtgataatttctgttaacttgttttgcc-
   ||| |||||  | || || |  ||||||||||||||||| || || ||||| || || |||||||||||| | ||||||||||| ||||| ||||||||| ||      ||  |     |||  |||  | |    | |       |  |  |  | | ||  |  ||  |  |  ||||||  |   || | | |  
AACATATCAAAACCTAATAACTCAATCAATGTATGACAAACAGCTAGATAGTGGGAAAGGCACACTTCTCCATCTCTGTGATGATGTGATTCAGCAGGAAgtaggtctccatattgtagtacttgattcagaataagcatatcagagacttgtgctcacaattattttcatctttgtggtttctga-attctgatgtccag

upper sequence: GLYMA02G07370.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os11g32490.1 (Oryza sativa), 5'ss of exon 12
CCAATACCAAAATTTGATTACACGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtgctagcatgatgtgctttgtgtcattacatttgttttgttttttaattttttccaataaatcaatagtgataatttctgttaacttgttttgcc
    ||||| ||||||||||||   || |||||||| ||||| || |||||||| || || |||||||| ||||| ||||||||||| || || || ||||||  ||  | ||||  |   ||    |   || || |   |||| |||   | | | ||| | |   |  |       || | |               
GTCTTACCAGAATTTGATTACAAAATCGATGTATGATAAACAGCTTGACAGTGGGAAAGGAACACTTCTGCATTTGTGTGATGATGTGATCCAGCAAGAAgta--tggaaccatgggggatttctctttgatatatataacttgtcttt--gtatatgccactgacatataaaatgggtttgcag---------------

upper sequence: GLYMA02G07370.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G161168_T01 (Zea mays), 5'ss of exon 12
CCAATACCAAAATTTGATTACACGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtgctagcatgat-----gtgctttgtgtcattacatttgttttgttttttaattttttccaataaatcaatagtgataatttctgttaacttgttttgcc
    |||||||| || || || |  |||||||||||||||||||| || ||||| || || ||||| |||||  | ||||||||||| ||||||||||| ||| || |   |   |      ||||||| |       || |    |   |  | | |   |||| ||  || | | ||  | | || | |||   |   |    
AACCTACCAAAACTTAATCACTCAATCAATGTATGACAAACAACTAGATAGTGGGAAAGGCACACTCCTCCACCTCTGTGATGATGTGATTCAACAGGAGgtaggtccacactctacactcagtgctttcttgaggaccaataaaataaatactcactccgttccgatttataatttgtt-tgactttttttattctaagt----

upper sequence: GLYMA02G07370.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G052279_T01 (Zea mays), 5'ss of exon 9
CCAATACCAAAATTTGATTACACGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtgctagcatgatgtgctttgtgtcattacatttgttttgttttttaattttttccaataaatcaatagtgataatttctgttaacttgttttgcc------
    |||||||| || || || |  |||||||||||||||||||| |  ||||| || || ||||| |||||  | ||||||||||| ||||||||||| ||| || |   ||   |   ||  |||   |       |     |    ||| |  | ||       | ||  | ||||||| | || |||| |||   |      
AACCTACCAAAACTTAATCACTCAATCAATGTATGACAAACAACTAGTTAGTGGGAAAGGCACACTCCTCCACCTCTGTGATGATGTGATTCAACAGGAGgtaggtcc--acactctacactcagtgctttcttgag-gaccaataaaataaatactccctccgttccgat--ttataatttgt-ttgacttttttattctaagtt

upper sequence: GLYMA02G07370.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G19340.1 (Arabidopsis thaliana), 5'ss of exon 12
CCAATACCAAAATTTGATTACACGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtgctagcatgatgtgctttgtgtcattacatttgttttgttttttaattttttccaataaatcaatagtgataatttctgttaacttgttttgcc
    || || || ||||| || | |||||||||||| |||||||| ||||| || | ||| || || || ||||| ||||||||||| ||||| || ||||||||| |  ||||||  | | ||||   |  | |            ||   |   ||  |||  |                                  
TACGTATCAGAACTTGATAACTCAGTCAATGTATGATAAACAACTAGACAGCGGGAGGGGAACGCTACTACATTTGTGTGATGATGTGATTCAGCAAGAAgtaagttcccgcatga-atacattgtaatacaatagaaacaaaaagcttacttggattgtaatgcacag-------------------------------

upper sequence: GLYMA02G07370.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 12
CCAATACCAAAATTTGATTACACGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtgctagcatgatgtgctttgtgtcattacatttgttttgttttttaattttttccaataaatcaatagtgataatttctgttaacttgttttgcc---------
   ||| || || || || ||||  || |||||||| || || ||||| |||||||||||||| ||||| || || |||||||| || |||||||| ||||||||| |||  ||   |   |||       ||  | | |    | ||||  | |||    |||  |||||| ||||  ||| | ||            |         
TGCATATCAGAACTTAATCACACAATCCATGTATGATAAGCAGCTGGATAGTGGAAAGGGTACTCTTCTTCACTTGTGTGATGACGTGATTCAACAAGAAgtaagttctaaaatagaggaattt-------taattctatccaatattttggtctttcttgatag-tcaata-tgatttttttttttggtgaaaccatacagaaaattt