1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTGAACTTGTAGAAAAAGTTGTACTTCTTGGAGCACCCATCCCAATCATGGATGAGAACTGGGAAGCAACTAGAAAGgtttgtgggggatttaattttactcttaataggtttttctcatattttatttatgaaaatgaatcttttctaacttcctggtattcggtattctgtag
species | Glycine max |
transcript | GLYMA02G05680.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGCACCCATCCCAATCATGGATGAGAACTGGGAAGCAACTAGAAAG ATGGTAGCAGGAAGATTTGTGAATGCTTACTCGAGGACTGACTGGATGCTTEST: gi|31462052|gb|CD404080.1|CD404080
genomic: TTGGAGCACCCATCCCAATCATGGATGAGAACTGGGAAGCAACTAGAAAGgtttgtgggg ... tattctgtagATGGTAGCAGGAAGATTTGTGAATGCTTACTCGAGGACTGACTGGATGCTT
EST: TTGGAGCACCCATCCCAATCATGGATGAGAACTGGGAAGCAACTAGAAAG ATGGTAGCAGGAAGATTTGTGAATGCTTACTCGAGGACTGACTGGATGCTTEST: gi|151404374|gb|EV274184.1|EV274184
genomic: TTGGAGCACCCATCCCAATCATGGATGAGAACTGGGAAGCAACTAGAAAGgtttgtgggg ... tattctgtagATGGTAGCAGGAAGATTTGTGAATGCTTACTCGAGGACTGACTGGATGCTT
EST: TTGGAGCACCCATCCCAATCATGGATGAGAACTGGGAAGCAACTAGAAAG ATGGTAGCAGGAAGATTTGTGAATGCTTACTCGAGGACTGACTGGATGCTT
genomic: TTGGAGCACCCATCCCAATCATGGATGAGAACTGGGAAGCAACTAGAAAGgtttgtgggg ... tattctgtagATGGTAGCAGGAAGATTTGTGAATGCTTACTCGAGGACTGACTGGATGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAACTTGTAGAAAAAGTTGTACTTCTTGGAGCACCCATCCCAATCATGGATGAGAACTGGGAAGCAACTAGAAAGgtttgtgggggatttaattttactcttaataggtttttctcatattttatttatgaaaatgaatcttttctaacttcctggtattcggtattctgtag
- - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA