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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgccaagactaatttgataaatgccaaatattttgtcaagttaatttgattttctatataggccatgtttgagcatgagaaattcatcatttctcccataccttcccaaatgtttgaaatcataagaaaaaaggggtcattatgtagaattgacaattacctataacttgcag

Basic information

species Glycine max
transcript GLYMA02G04320.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717502|gb|BW654405.1|BW654405
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|120490930|gb|EH219097.1|EH219097
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|120495674|gb|EH223841.1|EH223841
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|120529136|gb|EH257270.1|EH257270
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|31471775|gb|CD413803.1|CD413803
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|23064228|gb|BU579001.1|BU579001
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|23064069|gb|BU578842.1|BU578842
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|22525213|gb|BU084024.1|BU084024
EST:     CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTT
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTT
EST: gi|120534088|gb|EH262221.1|EH262221
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|120529217|gb|EH257351.1|EH257351
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|31475863|gb|CD417891.1|CD417891
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|31465137|gb|CD407165.1|CD407165
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|22522821|gb|BU081632.1|BU081632
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|31561742|gb|CD487580.1|CD487580
EST:     AATCCACCTCAAGCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAG
EST: gi|20813120|gb|BQ297598.1|BQ297598
EST:     CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGCTAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|13482372|gb|BG511715.1|BG511715
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|22525567|gb|BU084378.1|BU084378
EST:     CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGCTAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|120495271|gb|EH223438.1|EH223438
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|13481734|gb|BG511077.1|BG511077
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|208071978|gb|GD867698.1|GD867698
EST:     CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGAGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGCTAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|23064220|gb|BU578993.1|BU578993
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATA
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATA
EST: gi|31467900|gb|CD409928.1|CD409928
EST:     CAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGGGCAAGGATAATGACTGATGG
genomic: CAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|31475761|gb|CD417789.1|CD417789
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|120494927|gb|EH223094.1|EH223094
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|13481252|gb|BG510595.1|BG510595
EST:     CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGATCAAGGCTAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|23735380|gb|BU765969.1|BU765969
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|17519349|gb|BM188391.1|BM188391
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAG
EST: gi|193715695|gb|FK648970.1|FK648970
EST:     CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGG
EST: gi|120493211|gb|EH221378.1|EH221378
EST:     AATCCACCTCAACCTGGAGATATTTCGTATGACCAATTTGTTAGGGATAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|17400294|gb|BM177076.1|BM177076
EST:     CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGCTAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|16349405|gb|BI975000.1|BI975000
EST:     AATCCACCTCAACCTGGAGATATTTCTTATGACAAA-TTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: gi|20812986|gb|BQ297464.1|BQ297464
EST:     CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG                         CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGCTAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgccaagactaatttgataaatgccaaatattttgtcaagttaatttgattttctatataggccatgtttgagcatgagaaattcatcatttctcccataccttcccaaatgtttgaaatcataagaaaaaaggggtcattatgtagaattgacaattacctataacttgcag

- - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - GGAGAT