1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGCAAGGATGCACATCTTTGTGAGGAGAGGGGGTCCCAACTACCAGAAGGGTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaattcatgcctttattattgattgtattgaagtattgaacgaccaatttatgctgtttggaatatttgccttgaggaacaatctttaatctttttggttatctatcttttttatag
species | Glycine max |
transcript | GLYMA02G04120.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|209699584|gb|BW678087.1|BW678087
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|57575455|gb|CX548430.1|CX548430
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|13563285|gb|BG551505.1|BG551505
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|208286266|gb|GE087766.1|GE087766
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: CACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|209697932|gb|BW670134.1|BW670134
genomic: CACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|15200604|gb|BI424435.1|BI424435
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|23734638|gb|BU765558.1|BU765558
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|207731938|gb|GD705185.1|GD705185
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGEST: gi|4289176|gb|AI441438.1|AI441438
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|9564586|gb|BE474095.1|BE474095
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|192305538|gb|FG994304.1|FG994304
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|4397575|gb|AI496572.1|AI496572
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|6725270|gb|AW309669.1|AW309669
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|58016426|gb|CX703168.1|CX703168
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|10237746|gb|BE806634.1|BE806634
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|10253979|gb|BE821689.1|BE821689
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|209701248|gb|BW652226.1|BW652226
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|213610810|gb|DB974873.1|DB974873
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|213602664|gb|DB978107.1|DB978107
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|193668590|gb|FK611848.1|FK611848
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAG GTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
genomic: GTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaat ... ttttttatagGTTTATGGACCCGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAGGATGCACATCTTTGTGAGGAGAGGGGGTCCCAACTACCAGAAGGGTCTAGCTTTGATGCGAGCACTTGGAGAGGAGATTGGCATCCCCATTGAGgtaacctaattcatgcctttattattgattgtattgaagtattgaacgaccaatttatgctgtttggaatatttgccttgaggaacaatctttaatctttttggttatctatcttttttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT