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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGgtagacatcacttcattttattaaaatacttagttatgaccattgtagttagcaaacagtttccgtgacaggcaatttcttaattggtgtcatgattcacgaatttcag

Basic information

species Glycine max
transcript GLYMA02G01930.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01930.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 5'ss of exon 12
GGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGgtagacatcacttcattttattaaaatacttagttatgaccattgtagttag-caaacagtttccgtgacaggcaatttcttaattggtgtcatgattcacgaatttcag
|| || |||||||| |||||||||||||| ||||| ||||| ||||| |||||          | | | | | | |||||  | || |        || || | | || | | |     ||    | | |  |  |||     |   ||| | | |||   
GGAAAAGTTAACCCTACCCAGTGTGAGGCCTTGACCATGGTTTGTGCTCAGgtg---------tgaatgtgtgataatacccaattttacttgacttaatttgtccaatactcttatgcacttatattgtactgtttgtacaaacagttctctactttgt-

upper sequence: GLYMA02G01930.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 12
GGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGgtagacatcacttcattttattaaaatacttagttatgaccattgtagttagcaaacagtttccgtgacaggcaatttcttaattggtgtcatgattcacgaatttcag
||||| ||||| || ||||||||||||||| |||| ||||| |||||||||||| | |        ||| |  ||||| || | |    |   |  | || || |     | | | |  |    |  || || || | |    ||||   |         
GGGAAAGTTAATCCAACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAGgtacaaaatttaatgtttgaagaaaattct-aatctccatattccttgtgaggactacatattcat--ctattatgttgtttatggttaaggtgatctgcacc------

upper sequence: GLYMA02G01930.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 13
GGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGgtagacatcacttcattttattaaaatacttagttatgaccattgtagttagcaaaca-gtttccgtgacaggcaatttcttaattggtgtcatgattcacga-atttcag
|||||||| || || || ||||||||||| ||||| ||||| ||||||||||||     ||  |     ||     || ||||||   ||||| || |  |||     | | ||   | |  |    ||   |  |||| ||    |   |  | ||| |||
GGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAGgtaagtcccatctatcaatac----attcttagtacagaccaatgaatctagatgctaaggttgtattattgttccttgactgtttgg-gttgcaaccaataacattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343889|gb|CO984622.1|CO984622
EST:     GGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG                         GTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTT
genomic: GGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGgtagacatca ... cgaatttcagGTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTT
EST: gi|51336381|gb|CO980247.1|CO980247
EST:     GGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG                         GTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTT
genomic: GGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGgtagacatca ... cgaatttcagGTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTT
EST: gi|192307576|gb|FG999615.1|FG999615
EST:     GGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG                         GTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTT
genomic: GGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGgtagacatca ... cgaatttcagGTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTT
EST: gi|151394627|gb|EV264498.1|EV264498
EST:     GGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG                         GTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTT
genomic: GGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGgtagacatca ... cgaatttcagGTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTT
EST: gi|26047345|gb|CA784166.1|CA784166
EST:     GGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG                         GTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTT
genomic: GGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGgtagacatca ... cgaatttcagGTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTT
EST: gi|51344356|gb|CO985089.1|CO985089
EST:     GGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG                         GTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTT
genomic: GGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGgtagacatca ... cgaatttcagGTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTT