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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatcaattcacttcattttattaaaatactttaatgttatgacttatgaaatactgattggcaaacacagtttctatgacttgtaataaaatcacacatattgaattttatggtgactgggaatttctgaattggtgtcatgaatttcag

Basic information

species Glycine max
transcript GLYMA02G01920.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 5'ss of exon 12
GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgta---------gacatcaattcacttcattttattaaaatactttaatg---ttatg-acttatgaaatactgattggcaaacacagtttctatgacttgtaataaaatcacacatattgaattttatggtgactgggaatttctgaattggtgtcatgaatttcag
|| || ||||||||||||||||||||||| ||||| ||||| ||||| |||||          || |  |    | || | || | | || |  |  |||    ||||| ||||||    ||||| |||  | | |||||| || |   ||||                                                                  
GGAAAAGTTAACCCTACCCAGTGTGAGGCCTTGACCATGGTTTGTGCTCAGgtgtgaatgtgtgataatacccaattttacttgacttaatttgtccaatactcttatgcacttatattgtactgtttg-tacaaacagtt-ctctactttgt------------------------------------------------------------------

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 12
GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatcaattcacttcattttattaaaatactttaatgt---tatgacttatgaaatactgattggcaaacacagtttctatgacttgtaat-aaaatcacacatattgaattttatggtgactgggaatttctgaattggtgtcatgaatttcag
||||| ||||| || ||||||||||||||| |||||||||| ||||| |||||| | |       | || || ||   | || | | |||| |   |||  ||| |||   |||   |      ||    || | |   || |  | ||  | |     |                                                  
GGGAAAGTTAATCCAACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAGgtacaaa-------atttaatgtttgaagaaaattctaatctccatattccttgtgagg-actacatatt---catctattatgttgtttatggttaaggtgatctgcacc------------------------------------------------

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 13
GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatcaattcacttcattttattaaaatactttaatgttatgacttatgaaatactgattggcaaacacagtttctatgacttgtaataaaatcacacatattgaattttatggtgactgggaatttctgaattggtgtcatgaatttcag
|||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||     ||  |  |   |  || |||  | |    ||||     |  |   ||      |||      |   |  | | ||  ||| ||  || | |||  |   |                                               
GGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAGgtaagtcccatctatcaatacattcttagtacagaccaatgaatctagatgctaaggttgtattattgttccttgactgtttgggttgcaaccaa-taacat-tgcag-----------------------------------------------

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 13
GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatcaattcacttcattttattaaaatactttaatgttatgacttatgaaatactgattggcaaacacagtttctatgacttgtaataaaatcacacatattgaattttatggtgactgggaatttctgaattggtgtcatgaatttcag
|| |||||||||||||| |||||||||||| | |||||||| ||||| |||||| |  |   |    |  ||| |  | || ||   | || | || |   |  |||| |  ||  ||||    | ||   | ||  | | |  | |   || ||| ||                                               
GGAAAGGTTAACCCTACTCAGTGTGAGGCTCTCACAATGGTCTGTGCTCAGgtaaa-gtttgtgtcttcaattctggttaattaagatgatatgatcaaccagaaaattc--atcagcaagt--aattatcaagatgtttga--agactgca-ataatg-----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310922|gb|FG998898.1|FG998898
EST:     GGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG                         GTCATAGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTT
genomic: GGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatca ... tgaatttcagGTCATAGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTT