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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACTCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaactaattctctgatgaatattatgttcttgtatccttttatttaattgcttgtgtaatgctgatgttgccggtgttctgacacag

Basic information

species Glycine max
transcript GLYMA02G01220.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01220.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g19150.5 (Oryza sativa), 5'ss of exon 12
GAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACTCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaactaattctctgatgaatattatgtt--cttgtatccttttatttaattgcttgtgtaatgctgatgttgccggtgttctgacacag
||||  ||   ||| |||||||| |||||||| || ||||||||| ||||| |||||||||| |||   ||||||||||| || || ||||   |   |||||||   |||   | |  | |||   |      ||   |  |  | |    | |     ||   |||| |     |   ||  ||   ||||
GAGGTGTTAATTCATCCATTCTTCGATGAACTACGAGATCCAAATGCTCGCTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaag--ttaagatttttgtcaatgccagaccaactgaaacaccctgacagcaatatcc-tgatttgctaa-----ctactgaacttgaacag

upper sequence: GLYMA02G01220.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os05g04340.1 (Oryza sativa), 5'ss of exon 12
GAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACTCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaactaattctctgatga-atattatgttcttgtatccttttatttaattgcttgtgtaatgctgatgttgccggtgttctgacacag--------
|| || |||   || || ||||| |||||||| ||||||||||| || ||| |||| || || |||| |||||| || ||||| |||||||   || ||||||||     |    | | ||| |||| |  | | |  |      | | | |      |   ||     |  |  |   |  |||| |  |         
GAAGCATTGATCCATCCCTTCTTCGATGAACTCCGTGATCCAAACACCCGCTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgcaacaccggctgacatatgacatgcgtagacgaaaatttctgaaccaccgatcaacttataattatctactaatctggccgatttgaacag

upper sequence: GLYMA02G01220.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G075992_T01 (Zea mays), 5'ss of exon 7
GAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACTCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaactaattctctgatgaatattatgttcttgtatccttttatt-taattgcttgtgtaat-gctgatgttgccggtgttctgacacag-------
||||| ||    || ||||||||||||||||||||  | |||||  | || ||||||||||| |||| ||||||||  ||||| || || | | | |||||||||  |    | | |    | |   | |  ||   |   |    |  |  ||| ||  | | | | |   | ||  |  | || | |  ||       
GAGGCGTTAATCCATCCATTCTTTGATGAACTGCGGTACCCAAACTCACGTCTACCAAATGGCCGTTCCCTTCCCCATCTCTTCAATTTTAAACCTAATGgtaagttcatgctatttcgacatttgcacgggctgaaactttaaggtagtgtttggttccggagtcggttgggatggagcagctccgtccgagagatttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208310212|gb|GE107630.1|GE107630
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCA
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCA
EST: gi|193667331|gb|FK608071.1|FK608071
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGT
EST: gi|193366095|gb|FK329060.1|FK329060
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAAACTGATTCCATCTCAT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAA-CTGATTCCATCTCAT
EST: gi|10254836|gb|BE822602.1|BE822602
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|208081126|gb|GD880758.1|GD880758
EST:     CCTACCAAATGGGCGTTACCTT-CCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|9901022|gb|BE609988.1|BE609988
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCC
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCC
EST: gi|193316799|gb|FK279519.1|FK279519
EST:     ACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: ACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|16349285|gb|BI974880.1|BI974880
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193392613|gb|FK358772.1|FK358772
EST:     CCTACCAAATGGGCGTTACCTTCCCC-ACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193351994|gb|FK316359.1|FK316359
EST:     TACCAAAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: TACC--AAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193359920|gb|FK324242.1|FK324242
EST:     CCTACCAAATGGGCGTTACCTTCCCC-ACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193356255|gb|FK321428.1|FK321428
EST:     CCTACCAAATGGGCGTTACCTTCCCC-ACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGT
EST: gi|207797958|gb|GD768522.1|GD768522
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTG
EST: gi|13791263|gb|BG653854.1|BG653854
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCT
EST: gi|193349034|gb|FK318152.1|FK318152
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|7590534|gb|AW706284.1|AW706284
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCT
EST: gi|193476944|gb|FK440421.1|FK440421
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|13562753|gb|BG550973.1|BG550973
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCT
EST: gi|9259545|gb|BE347700.1|BE347700
EST:     CCTACCAAATGGGCGTTACCTTGCCCCACTCTTTAGCTACAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193303715|gb|FK268989.1|FK268989
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|208249791|gb|GE045470.1|GE045470
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATT
EST: gi|207794723|gb|GD764810.1|GD764810
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTACAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|207795780|gb|GD764061.1|GD764061
EST:     GCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: GCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193346877|gb|FK310145.1|FK310145
EST:     CCTACCAAATGGGCGTTACCTT-CCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG