1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaaccaactaccaatcaccttgtctgttattgacttcaataactatattttcaaactataaaaacaaattttcatgagaaactttttcaatataaaatcattttttttcattattgatttaaaagttacatgattgattgagtgcatacaaatgacctgacttgtttctaatgttggtag
species | Glycine max |
transcript | GLYMA01G42940.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GAGCCTT-TATTTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTG GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAACEST: gi|254332376|gb|GR846421.1|GR846421
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
EST: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTG GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAACEST: gi|192332460|gb|FK024221.1|FK024221
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
EST: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTG GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAACEST: gi|151395947|gb|EV265824.1|EV265824
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
EST: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTG GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAACEST: gi|151400533|gb|EV270347.1|EV270347
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
EST: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATACGGCTTTG GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAACEST: gi|192332461|gb|FK024222.1|FK024222
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
EST: GAGCCTTAGAAGTGGATATTTTTTGTGGGCAATGTTTGCATATGGCTTTG GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAACEST: gi|7284908|gb|AW597395.1|AW597395
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
EST: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTG GTCTTTTAGTTACATACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaaccaactaccaatcaccttgtctgttattgacttcaataactatattttcaaactataaaaacaaattttcatgagaaactttttcaatataaaatcattttttttcattattgatttaaaagttacatgattgattgagtgcatacaaatgacctgacttgtttctaatgttggtag
- - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - AGTGGA