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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCAAGAACTAGCTGCTGATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttctttcatattttacatgttggttgttttgttataaactccatgattgcgtctctagatttacaataatactgcattgtctcaggaaagtgag...

Basic information

species Glycine max
transcript GLYMA01G41600.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41600.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 10
GTTTTCAAGAACTAGCTGCTGATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttctttcatattttacatgttggttgttttgttataaactccatgattgcgtctctagatttacaataatactgcattgtctcaggaaagtgag-
| |||   |||||| | ||||||||||| || ||||||||||| |||||||| || || ||||||||||||| ||||||||      |  ||| |  |  |   |  ||   ||  || |||||    ||||   ||||        || ||| |  |    | || ||  
GCTTTGCTGAACTATCAGCTGATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttcttatcctctccacaggaggaatccatgcttcataatgccttgattctacctctccctttagtgcctctcttcat-gaatatccagagcgacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6200959|gb|AW153059.1|AW153059
EST:     GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
genomic: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: gi|213592086|gb|DB975236.1|DB975236
EST:     TTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGCGGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
genomic: TTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: gi|10255025|gb|BE822791.1|BE822791
EST:     GATTTAGTTGATGCNNNAGTTGCTCATTNNNAGTTAATCGTTGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
genomic: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: gi|12773194|gb|BG238121.1|BG238121
EST:     GCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
genomic: GCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: gi|58017133|gb|CX703875.1|CX703875
EST:     GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
genomic: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: gi|308222719|gb|HO760629.1|HO760629
EST:     GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
genomic: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: gi|58018391|gb|CX705133.1|CX705133
EST:     GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
genomic: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: gi|19271160|gb|BM887416.1|BM887416
EST:     GATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
genomic: GATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA