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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTCGTGTTAATGATATGGGCAGATTGATTGAAGAACAAGCTCAATATGTAATTGATGCTACTAAGTTTGGAAATGTCTCAAGATTCATCAATCATAGgtgagcattttgctccttagtttgacatagttttggttgcaacatggttctttaatcgattttttgctacactaactgttttaaaatgccagttggtaaa...

Basic information

species Glycine max
transcript GLYMA01G38670.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38670.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv04s0023g00980.t01 (Vitis vinifera), 5'ss of exon 9
ATGCTCGTGTTAATGATATGGGCAGATTGATTGAAGAACAAGCTCAATATGTAATTGATGCTACTAAGTTTGGAAATGTCTCAAGATTCATCAATCATAGgtgagcattttgctccttagtttgacatagttttggttgcaacatggttctttaatcgattttttgctacactaactgttttaaaatgccagttggtaaa--------
|  ||| | | ||||||||| |||||||| | |||| ||| | ||  ||||||||||||||||| |  | ||||||||| ||| | ||||||||||| |||||||      | | ||       |  |  | ||  ||| || ||| ||  |||  |  |  |||   |  |||  | ||  ||  ||||   | ||  |        
ACTCTCATATCAATGATATGAGCAGATTGGTAGAAGGACAGGTTCCTTATGTAATTGATGCTACAAGATATGGAAATGTTTCACGGTTCATCAATCACAGgtgagggaagagtttct-------atgtgctgttttttggaatatgctttcttatgctctggtttag-aagctatatattgcaacttgcctacttgtgcaaccattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677586|gb|BQ629937.1|BQ629937
EST:     GTAATTGATGCTACTAAGTTTGGAAATGTCTCAAGATTCATCAATCATAG                         CTGCTCACCAAATCTTGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTG
genomic: GTAATTGATGCTACTAAGTTTGGAAATGTCTCAAGATTCATCAATCATAGgtgagcattt ... gttgttgtagCTGCTCACCAAATCTTGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTG
EST: gi|21994409|gb|BQ785937.1|BQ785937
EST:     GTAATTGATGCTACTAAGTTTGGAAATGTCTCAAGATTCATCAATCATAG                         CTGCTCACCAAATCTTGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTG
genomic: GTAATTGATGCTACTAAGTTTGGAAATGTCTCAAGATTCATCAATCATAGgtgagcattt ... gttgttgtagCTGCTCACCAAATCTTGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTG
EST: gi|254346486|gb|GR856208.1|GR856208
EST:     GTAATTGATGCTACTAAGTTTGGAAATGTCTCAAGATTCATCAATCATAG                         CTGCTCACCAAATCTTGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTG
genomic: GTAATTGATGCTACTAAGTTTGGAAATGTCTCAAGATTCATCAATCATAGgtgagcattt ... gttgttgtagCTGCTCACCAAATCTTGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTG