1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTTAGAGGTAGCAACACCTATTCTAATTCCTAGAAGTGACGGTCATAGGCATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGgtatgccattgtttgacttcttagggttataatatttgttaaattgtttgttgagcaccaatactgtttctccatttttgtttatctaagtgtttcctgt...
species | Glycine max |
transcript | GLYMA01G37580.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAG ATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGGEST: gi|120532888|gb|EH261021.1|EH261021
genomic: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGgtatgccatt ... ttccctgcagATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGG
EST: ATCGGAAGGGAAGCCATGGTGATG-TATCTTCTTGACAAATCGTGGAGAG ATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGGEST: gi|7588619|gb|AW704411.1|AW704411
genomic: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGgtatgccatt ... ttccctgcagATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGG
EST: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAG ATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGGEST: gi|6069810|gb|AW099416.1|AW099416
genomic: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGgtatgccatt ... ttccctgcagATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGG
EST: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACATATCGTGGAGAG ATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGG
genomic: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGgtatgccatt ... ttccctgcagATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAGAGGTAGCAACACCTATTCTAATTCCTAGAAGTGACGGTCATAGGCATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGgtatgccattgtttgacttcttagggttataatatttgttaaattgtttgttgagcaccaatactgtttctccatttttgtttatctaagtgtttcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA