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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGGGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgtattagcatgctcagggacattctactctaccaatttcttaatttcggcctttggacttattcatatcttcattactttggagttattttatattattagtattttatcattctttgaag

Basic information

species Glycine max
transcript GLYMA01G35950.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os04g57140.1 (Oryza sativa), 5'ss of exon 10
GTTGAGGGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgtattagcatgctcagggacattctactctaccaatt-tcttaatttcggcctttggacttattcatatcttcattactttggagttattttatattattagtattttatcattctttgaag
  |||| || || ||||||||||| ||||||||||| || || || ||||||||| |||| || ||||||||||| || |||||||||||||| ||||||||  |||     | |      | | |    |  | |  |  ||  |   | || || | | |  ||| |  |  |||                                             
ACTGAGAGATATCATGCAATTTGGGAGCAGCAATACCGCTGTTTTCTTTAAAATGAGAGTCGCTGGTGTTCTTCATATCTTTCAGTTTGAAACTAAGCAGgt--tagt---tttaaatctctaccaggaaataattcatactatgtgtaggctgtgaaataac-catctgatatttag--------------------------------------------

upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G070273_T01 (Zea mays), 5'ss of exon 10
GTTGAGGGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgtattagcatgctcagggacat---tctactctaccaatttcttaatttcggcctttggacttattcatatcttcattactttggagttattttatattattagtattttatcattctttgaag
  | || ||||| ||||||||||| |||||||||||||| || || ||||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||   | |||  | | ||    | ||   |||           ||    | |    |  | ||   ||    || |||||  ||                                     
ACTAAGAGACATCATGCAATTTGGTAGCAGCAATACTGCTGTCTTCTTTAAAATGCGGGTTGCTGGTGTTCTTCATATCTTTCAATTTGAAACAAAGCAGgtattctaaagcttcgaggcaatagtttataatacagccgatcctgttatatcatccatagctgttagaataacgatgactttttag-------------------------------------

upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G423861_T02 (Zea mays), 5'ss of exon 10
GTTGAGGGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgtattagcatgctcagggacattctactctaccaatttcttaatttcggcctttggacttattcatatcttcattactt--tggagttattttatattattagtattttatcattctttgaag
 || || ||||| ||||||||||| |||||||||||||| || || ||||||||||||||||| ||||| ||||| || ||||| ||||||||||||||||||||   | | |  | | || |           | ||| ||||    || | ||  | | || ||||| ||  ||  |  | || | |   | | || ||||                    
ATTAAGAGACATCATGCAATTTGGTAGCAGCAATACTGCTGTTTTCTTTAAAATGCGAGTTGCTGGTGTCCTTCATATCTTTCAATTTGAAACAAAGCAGgtattctaaagtttcgaggcaat-----------agttcataat----gcatctgatcctgtt-atatcatctataactgatagaataaccatgtttt-ttag--------------------

upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G65930.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTGAGGGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgtattagcatgctcagggacattctactctaccaatttcttaatttcggcctttggacttattcatatcttcattactttggagttattttatattattagtattttatcattctttgaag
  |  | ||||| ||||||||||| ||||| || ||||| || ||||| |||||| |||| || ||||||||||||||||||||||| || ||||| ||||| | | |||    |      || |     |  |  || | ||      ||||  ||  |||||| || |   | ||||    ||   ||| ||                           
ACTACGTGACATCATGCAATTTGGCAGCAGTAACACTGCTGTCTTTTTCAAAATGAGAGTCGCTGGTGTTCTTCACATATTTCAGTTCGAGACAAAACAGgtttaaacatcactat-----ttgtggatcattatattatgaagcaattccttatgagatattca-atttgggtaactt----gtatgtttgtag--------------------------

upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 11
GTTGAGGGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgta-ttagcatgctcagggacattctac-----tctaccaatttcttaatttcggcctttggacttattcatatcttcattactt-----tggagttattttatattattagtattttat--cattctttgaag
  | || || |||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||| || |||||||| ||||||||||| || |||||  |||   |  | ||   |  | |       | || || |||   | |||  | || |    |  || || | ||| ||  ||     |  |   ||| |   ||  |||  || |||  |||| | || ||
ACTAAGAGATATAATGCAATTTGGTAGCAGCAATACTGCTGTATTTTTTAAGATGAGAGTTGCAGGTGTCCTCCACATATTCCAGTTTGAAACTAAACAGgttcttaatcttttgagtttctatatgtatatatataacatttttagagttttagtctcttttttcttttatgtattccttgtttgcctatcaaaaaattattatttgatagagttctattccattttatgcag

upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S199_47V6.1 (Physcomitrella patens), 5'ss of exon 13
GTTGAGGGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgtattagcatgctcag----ggacattctactctaccaatttcttaatttcggcctttggacttattcatatcttcattactttggagttattttatattattagtattttatcattctttgaag
| || | || || |||||||| || || || |||||||| || |||||||| ||||| ||||| || |||||||| || || ||||| |||||||||||||||||   |     ||     | | | |     || | |            ||  ||  || | ||| ||| |||  | | ||  ||     | | |   ||| |  ||  | ||          
GCTGCGTGATATCATGCAATTCGGCAGTAGTAATACTGCCGTTTTTTTTAAGATGCGTGTTGCTGGAGTTCTTCATATTTTCCAGTTCGAAACAAAGCAGgtatttataaatcaagtgtaagtcgtacggtcatatccaagctgctgcggtggttttatgagtcatttataacttggtaatttatga-----tgtgtgggattggc-ttcaaacag---------

upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S83_25V6.1 (Physcomitrella patens), 5'ss of exon 12
GTTGAGGGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgtattagcatgctcagggacattctactctaccaatttcttaatttcggcctttggacttattcatatcttcattactttggagttattttatattattagtattttatcattctttgaag
|||| | || || ||||| ||||| || || || ||||| |||||||||||||||||||| || || || || || || |||||||| ||||||||||||||||    || || |  | |  |   |     |||  |  |    |  |  |||    ||| | ||   | ||  | |||   || |  |    ||   |                     
GTTGCGAGATATCATGCAGTTTGGCAGTAGTAACACTGCTGTATTTTTTAAAATGCGAGTCGCTGGAGTCCTACATATTTTTCAGTTCGAAACAAAGCAGgtatc--tattcttaatgtctatggtcatactcaagcttctgcggtgtggatttaattttagttatgagt-caacaatttaatgtaaaatccctttgaaacag------------------

upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 13
GTTGAGGGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgt-attagcatgctcagggac-attctactctaccaatttcttaatttcggcctttggacttattcatatcttcattactttggagttattttatattattagtattttatcattctttgaag
  || | ||||| ||||||||||| |||||||| || || || ||||| |||||||| || || ||||| || || || ||||||||||| || |||||||| |||  | | |  ||       | |   ||  ||| | | || | |     |   || |||||  |   ||   |  |  | ||                                     
ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgttattttcgtacctagatcttgctttgtacttgcaaatcccta-tattattttggagatttatttttggtttgtcttgtgagcag-------------------------------------

upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ30174 (Selaginella moellendorffii), 5'ss of exon 11
GTTGAGGGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgtattagcatgctcagggacattctactctaccaatttcttaatttcggcctttggacttattcatatcttcattactttggagttattttatattattagtattttatcattctttgaag
| |||| ||||| |||||||||||||| |||||||| ||||| |||||||||||||| || || || ||| | ||||| |||||||||||||| || ||||| |       ||  | | | |||           | ||| |||||| | |   |                                                                  
GCTGAGAGACATCATGCAATTTGGAAGTAGCAATACCGCAGTGTTTTTTAAAATGCGTGTGGCGGGAGTTTTGCACATTTTTCAGTTTGAAACTAAACAGgtgt-------ctttgtggctttccgtgtagttcttctctaaatttctgtcgcag------------------------------------------------------------------

upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ06058 (Selaginella moellendorffii), 5'ss of exon 11
GTTGAGGGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgtattagcatgctcagggacattctactctaccaatttcttaatttcggcctttggacttattcatatcttcattactttggagttattttatattattagtattttatcattctttgaag
| | || ||||| |||||||||||||| |||||||| ||||| |||||||||||||| || || || ||| | ||||| |||||||||||||| || ||||| ||       |  | | | |||           | ||| |||||| | |   |                                                                  
GCTTAGAGACATCATGCAATTTGGAAGTAGCAATACCGCAGTGTTTTTTAAAATGCGTGTGGCGGGAGTTTTGCACATTTTTCAGTTTGAAACTAAACAGgtgtt-------tttgtggctttccgtgtagttcttctctaaatttctgtcgcag------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207686444|gb|GD669244.1|GD669244
EST:     AAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAG                         GGAGAAGAAATTTGTGTAGCTCTTCAGACACACATAAATGACGTAATGCTG
genomic: AAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgtattagcat ... ttctttgaagGGAGAAGAAATTTGTGTAGCTCTTCAGACACACATAAATGATGTAATGCTG