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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTGTATAGCTTTGGTGTGTTGACACTTGAAGTGCTGAGTGGAAAGCGGCCAACAGACGCAGCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGGgtatgtcattcacacaaatattggattttagtataagttatgatctcgttctagttttttgttttttaaataactaaatattttatattttaatataaac...

Basic information

species Glycine max
transcript GLYMA01G35390.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35390.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM5G886952_T01 (Zea mays), 5'ss of exon 13
TGATGTGTATAGCTTTGGTGTGTTGACACTTGAAGTGCTGAGTGGAAAGCGGCCAACAGACGCAGCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGGgtatgtcattcacacaaatattggattttagtataagttatgatctcgttctagttttttgttttttaaataactaaatattttatattttaatataaac
|||||| || || ||||| || |||  ||| ||| | || |||||||||||||| || || ||| | |||||||| ||||| || || |||||||| |||||||||| | | |    || ||   | |||      |  ||  | || |||||     |||   |      ||   |  || || | ||||   |     
TGATGTCTACAGTTTTGGGGTTTTGGTACTCGAAATACTCAGTGGAAAGCGGCCTACTGATGCATCCTTCATTGAGAAGGGACTAAACATTGTTGGATGGgtatgtcctgctcgattattttaattcttaaggcttgc-atactttc-ttctatcgagttggagtaacctgaaaggatcatcttgtcttttggcag----

upper sequence: GLYMA01G35390.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv02s0087g00170.t01 (Vitis vinifera), 5'ss of exon 13
TGATGTGTATAGCTTTGGTGTGTTGACACTTGAAGTGCTGAGTGGAAAGCGGCCAACAGACGCAGCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGGgtatgtcattcacacaaatattggattttagtataagttatgatctcgttctagttttttgttttttaaataactaaatattttatattttaatataaac------
 ||  | ||||| ||||| ||  |||  ||||||||  ||  ||| ||||| || || || ||  | |||||||||||||| ||||| |||||||| |||||||||| | |   | |    ||  | |||  ||  ||| | | ||  ||    || | | || ||| |  |     || |    ||    | ||| |        
CGACATTTATAGTTTTGGGGTTCTGATGCTTGAAGTATTGGCTGGGAAGCGACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtc-tccttgcta----tgcttgttaagatt-gttttaagcttatttaccttatatcttctttcatcaggatcatttccggtaaccaattatcataattcac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327322|gb|FK019569.1|FK019569
EST:     GGCCAACAGACACAGCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGG                         TTGAATTTTCTAATTACAGAAAATAGGCCGAGGGAAATTGTTGACCCTCTA
genomic: GGCCAACAGACGCAGCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGGgtatgtcatt ... attgttgcagTTGAATTTTCTAATTACAGAAAATAGGCCGAGGGAAATTGTTGACCCTCTA
EST: gi|151393318|gb|EV263193.1|EV263193
EST:     GGCCAACAGACGCAGCATTCATTGAAAAGG-TCTCAATATTGTTGGTTGG                         TTGAATTTTCTAATTACAGAAA
genomic: GGCCAACAGACGCAGCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGGgtatgtcatt ... attgttgcagTTGAATTTTCTAATTACAGAAA
EST: gi|207812275|gb|GD784448.1|GD784448
EST:     TATTGTTGGTTGG                         TTGAATTTTCTAATTACAGAAAATAAGGCCGAGGGAAATTGTTGACCCTCT
genomic: TATTGTTGGTTGGgtatgtcatt ... attgttgcagTTGAATTTTCTAATTACAGAAAAT-AGGCCGAGGGAAATTGTTGACCCTCT
EST: gi|21601017|gb|BQ611348.1|BQ611348
EST:     GACCAACAGACGCAGCATTCATTGAAAAGGGCCTCAATATTGTTGGTTGG                         TTGAATTTTCTAATTACAGAAAATAGGCCGAGGGAAA
genomic: GGCCAACAGACGCAGCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGGgtatgtcatt ... attgttgcagTTGAATTTTCTAATTACAGAAAATAGGCCGAGGGAAA