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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATCAATATATGGTAGGAAGCAAAGTGAGTGGGACCAACTAGCCAGTTGGATAGTGAATAATGATTTGTACAGCGAGAATGTCGTTTGGTTGATTCAGgtattctttaattatttgtttagagcacagattggttttatttctcataatgatatggcaacaatttattatttctcccaatctacaaactattttggac...

Basic information

species Glycine max
transcript GLYMA01G29470.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G29470.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os05g28180.3 (Oryza sativa), 5'ss of exon 3
AATATCAATATATGGTAGGAAGCAAAGTGAGTGGGACCAACTAGCCAGTTGGATAGTGAATAATGATTTGTACAGCGAGAATGTCGTTTGGTTGATTCAGgtattctttaattatttgt-ttagagcacagattggttttatttctcataatgatatggcaacaattta--ttatttctcccaatctacaaactattttggac
 || ||||| ||||| |||||||||||||| |||||| | || || || ||||||||||| ||||| |||| ||| || ||||| || ||| || ||||||||  |||| | ||||| |  | |  |  || |   |   | ||   |||||  | | |||   ||| |   ||  |   |  |  |      | |  |  | 
GATTTCAATCTATGGGAGGAAGCAAAGTGAATGGGACAACCTTGCAAGCTGGATAGTGAACAATGAATTGTCCAGTGAAAATGTTGTCTGGCTGGTTCAGgtaccctttcactatttctgctcgtacttagctc--tagaaatttctataattgtcttgcagttattgaacctacatactctgaattgatttttgtgcttta-

upper sequence: GLYMA01G29470.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G416667_T01 (Zea mays), 5'ss of exon 11
AATATCAATATATGGTAGGAAGCAAAGTGAGTGGGACCAACTAGCCAGTTGGATAGTGAATAATGATTTGTACAGCGAGAATGTCGTTTGGTTGATTCAGgtattctttaattatttgt-ttagagcacagattggttttatttctcataatgatatggcaacaatttattatttctcccaatctacaaactattttggac---
 || ||||| || || ||||| || ||||| ||||||||||| || |||||||||||||| ||||| ||| |||| |  ||||| || ||| || ||||||||| ||||| |||||||| ||  |  |   |   ||   | |  |  ||||    |||||   | ||    |   | | |||    | ||||| |||||    
GATTTCAATCTACGGAAGGAAACAGAGTGAATGGGACCAACTTGCAAGTTGGATAGTGAACAATGAATTGCACAGTGGAAATGTTGTCTGGCTGGTTCAGgtatcctttatttatttgtattgtactagttagctgtggcagtgtttgtaatttcctggcacatagttgaactaattgctaat----acactatgttggatagt

upper sequence: GLYMA01G29470.2 (Glycine max), 5'ss of exon 12
lower sequence: AT2G38280.1 (Arabidopsis thaliana), 5'ss of exon 11
AATATCAATATATGGTAGGAAGCAAAGTGAGTGGGACCAACTAGCCAGTTGGATAGTGAATAATGATTTGTACAGCGAGAATGTCGTTTGGTTGATTCAGgt-----attctttaattatttgtttagagcaca---------gattg-----gttttatttctcataatgatatggcaaca--atttattatttctcccaatctacaaactattttggac-------------
|||||| |||||||| || ||    || |||||||||||||| || |||||||| ||||| |||||| | ||||| |||||||| || ||||| ||||||||     ||   ||   || |||| |    ||           || ||     ||||| ||| ||    ||   | | ||||  | |  | | |   |   || | |    | || ||                
AATATCTATATATGGCAGAAAAATGAGCGAGTGGGACCAACTCGCTAGTTGGATTGTGAACAATGATCTATACAGTGAGAATGTTGTCTGGTTAATTCAGgttagccatctctttgatacttgtgtgctccatgtccttccatgagtgtatgtgttttttttgtctccgtgtgtttgtaacatgactgctaactgagctatattttccttgttttctgtttgtctgctcactag

upper sequence: GLYMA01G29470.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 11
AATATCAATATATGGTAGGAAGCAAAGTGAGTGGGACCAACTAGCCAGTTGGATAGTGAATAATGATTTGTACAGCGAGAATGTCGTTTGGTTGATTCAGgtattctttaattatttgtttagagc-------acagattggttttatttctcataatgatatg-gcaacaatttattatttctcccaatctacaaactattttggac
 |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||   |  | ||   | |  |         | |  ||  ||||||||  |   | | |||   ||  ||   | |   | | ||  |  ||| |   |       
GATATCAATATATGGCAGAAAGCAAAGTGAGTGGGACCAACTTGCCAGTTGGATAGTGAATAATGATTTGTACAGTGAGAATGTTGTTTGGTTGATTCAGgtatttccttgt-atccctatgaaatttcccttataagtttattttatttaccggtaggttatatacagtaaaaaagtccctgtgcctgtgcacacatctt-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925052|gb|AW831078.1|AW831078
EST:     GGATAGTGAATAATGATTTGTACAGCGAGAATGTCGTTTGGTTGATTCAG                         CTTCCACGGTTGTACAATGTGTACAAAGAAATGGGAATTGTGACATCATTC
genomic: GGATAGTGAATAATGATTTGTACAGCGAGAATGTCGTTTGGTTGATTCAGgtattcttta ... tgtcttgcagCTTCCACGGTTGTACAATGTGTACAAAGAAATGGGAATTGTGACATCATTC
EST: gi|254332340|gb|GR846385.1|GR846385
EST:     GGATAGTGAATAATGATTTGTACAGCGAGAATGTCGTTTGGTTGATTCAG                         CTTCCACGGTTGTACAATGTGTACAAAGAAATGGGAATTGTGACATCATTC
genomic: GGATAGTGAATAATGATTTGTACAGCGAGAATGTCGTTTGGTTGATTCAGgtattcttta ... tgtcttgcagCTTCCACGGTTGTACAATGTGTACAAAGAAATGGGAATTGTGACATCATTC