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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATTCCACGATGAGGAAGGCAAAAGCTTTTGGGTGGAAATTGAGATTGTAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcctaaccaaattaatttctttagatttatttgggaagcactcaatttatgtgccattcttctttcatgccatgtaaattcaccag

Basic information

species Glycine max
transcript GLYMA01G27250.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G27250.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 12
GGCATTCCACGATGAGGAAGGCAAAAGCTTTTGGGTGGAAATTGAGATTGTAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcctaaccaaattaatttctttagatttatttgggaa-gcactcaatttatgtgccattcttctttcatgccatgtaaattcaccag-----
 || ||||  || || |||||||| ||||||||||||||||| ||||||||||| || ||||||| ||| || |||  |||||  || || || ||||| ||||| | ||    |  |   |     || ||||  |   |   ||| |  | |  | ||   |||     ||||    | ||||   || |      
AGCTTTCCGTGACGAAGAAGGCAAGAGCTTTTGGGTGGAAATAGAGATTGTAGACAAATACAGATTCCCGTCAGGGTCTCAAGCTCCTTATAATGTCACAgtaagatgctccttacctacctcaacgtatatttcctaaagtctgcaattcagtcttctgt-gttcaatcatcatcttctttaaaaaaacaaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347805|gb|GR854054.1|GR854054
EST:     TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACT                         ACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
genomic: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcct ... aattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
EST: gi|254347806|gb|GR854055.1|GR854055
EST:     TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACT                         ACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
genomic: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcct ... aattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
EST: gi|7588178|gb|AW703979.1|AW703979
EST:     TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACT                         ACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
genomic: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcct ... aattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
EST: gi|58021548|gb|CX708289.1|CX708289
EST:     TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACT                         ACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
genomic: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcct ... aattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
EST: gi|151401114|gb|EV270928.1|EV270928
EST:     TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACT                         ACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
genomic: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcct ... aattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
EST: gi|58018795|gb|CX705537.1|CX705537
EST:     TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACT                         ACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
genomic: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcct ... aattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG