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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCAGAGGGATTTGAAATGAGTGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCAAGgttgctgatgaaagtacaccttttactgtgtgtttaaccaataatttagggttttgaagcattttagtgcgggcaattgcctattgaatgtgatttctatcttatgatccattgtcattctgttctattcctattcttcattggcatacttcctccttttataactag

Basic information

species Glycine max
transcript GLYMA01G26350.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G26350.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g25140.1 (Oryza sativa), 5'ss of exon 12
GTGCCAGAGGGATTTGAAATGAGTGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCAAGgttgctgatgaaagtacaccttttactgtgtgtttaaccaataatttagggttttgaagcattttagtgcgggcaattgcctattgaatgtgatttctatcttatgatccattgtcattctgttctattcctattcttcattggcatacttcctccttttataactag
|| || || |||||||||||| | ||||| || ||||||||||| || | | || |||| || |||||||| || | ||| || ||||| ||||||||||||   |||    |  || ||  | | | | ||   |   |||| ||| ||  ||||  | | || ||   ||||  |                                                                                         
GTACCTGAAGGATTTGAAATGTGCGTTCGACTAATGCTTCCTGGTGAAAAATCTATTGTGACCTGCCCTCCAGATTTTGCATACGATAAATTTCCAAGgttgt--atgtggctttacattagaatctttttt---cttgtaatatagcgtgctgaa-taatctaatgattgcaacag-----------------------------------------------------------------------------------------

upper sequence: GLYMA01G26350.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G117746_T01 (Zea mays), 5'ss of exon 12
GTGCCAGAGGGATTTGAAATGAGTGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCAAGgttgctgatgaaagtacaccttttactgtgtgtttaaccaataatttagggttttgaagcattttagtgcgg--gcaattgcctattgaatgtgatttctatcttatgatccattgtcattctgttctattcctattcttcattggcatacttcctccttttataactag
|| |||||||| ||||||||| ||||||| || ||||||||||| || | | || ||||||| ||||| || || | ||| ||||||||||| ||||||| | ||   ||  |     | || | | ||   | |    ||||   ||  ||   |  | | || || ||  ||||  |                                                                                         
GTACCAGAGGGTTTTGAAATGTGTGTTCGGCTAATGCTTCCTGGTGAAAAATCTATTGTCACCTGCCCACCAGATTTTGCATATGATAAGTTCCCAAGgtcg-tgccaaacat-----tatttcagagtcccttattg-taatg-gggccttcagaataatatattgtggttgcaacag-----------------------------------------------------------------------------------------

upper sequence: GLYMA01G26350.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv08s0007g01460.t01 (Vitis vinifera), 5'ss of exon 13
GTGCCAGAGGGATTTGAAATGAGTGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCAAGgttgctgatgaaagtacaccttttactgtgtgtttaaccaataatttagggttttgaagcattttagtgcgggcaattgcctattgaa--tgtgatttctatcttatgatccattgtcattctgttctattccta--ttcttcattggc-atacttcc-tccttttataactag--------
||||| |||||  | |||||| |||||||||| ||||| || || |||||||||||||| ||||| ||||||||||| || |||||||||||||| |||||  |  |  || |  |  | |||     | ||||     |  | |          |     | |||   ||   ||     |||||  | | |||  |||  |    | |||  |||| || |||| |  | |  ||  |  ||    ||||||   |  || | |||| |         
GTGCCTGAGGGGCTGGAAATGTGTGTTCGTCTTATGCTGCCAGGGGAGATAGCTCTTGTAACATGTCCTCCTGACTACGCATATGATAAGTTTCCCAGgtta-tattccaaatctagttattatatattatttatattgtggtgtgccaaaaaccaatgcataagtagaggt--ttattagttgaaactctaattgttattgttatcttcatcctcatcctattctttctcaaggttgcttgttaatgatacttgtgtttttctttaaccatatgattag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193300115|gb|FK265798.1|FK265798
EST:     TAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCAAAG                         GCCTGTAAATGT
genomic: TAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCAA-Ggttgctgatg ... ttataactagGCCTGTAAATGT
EST: gi|193300308|gb|FK266677.1|FK266677
EST:     ATAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCAAG                         GCCTGTAAATGT
genomic: ATAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCAAGgttgctgatg ... ttataactagGCCTGTAAATGT