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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagtcccatagatttcataatccctaactgtttttttcttgttcaatgtctcatggttgccaactgttttggcttttgaatgtttctatgcag

Basic information

species Glycine max
transcript GLYMA20G24820.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 9
AATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagtcccatagatttcataatccctaactgtttttttcttgttc-----aatgtctcatggttgcca-act--gttttggcttttgaatg--tttctatgcag
|||||  ||||||| ||||| ||||| ||||| ||| ||||||| |  || || |||||||| ||||||||||| ||||| |||||||| || || |||||| ||| || |   |  ||       |   ||| | ||   | |||     | |||      ||  ||| |||   | | | ||  || |    |||   |||||
AATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATCGTGCACCTGAGATAAgtgagttccttttctcgcacttcattttgttgtgtattcaatattcttcctactgttattctgtctccatactacatgtggtctgatgcacaatttttcttgcag

upper sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G151236_T03 (Zea mays), 5'ss of exon 8
AATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagtcccat-agatttcataatccctaactgtttttttcttgttcaatg-tctcatggttgccaactgttttggcttttgaatgtttctatgcag----------------------------------------
|||||  | ||||| ||||| ||||| ||||| ||| |||||||||  ||||||||||| || |||||||| || ||||| ||||| || || || || ||| ||| |  | |   | ||   |   ||  | ||| ||||||  | | |  ||  ||| |  |    | | |     | |  || | | |||  |                                         
AATGTGCTCAAGCTATGTGATTTTGGGAATGCTATGCTTGCTGGTATGAATGAAGTTACGCCTTATCTTGTTAGCCGTTTCTATCGGGCACCTGAGATCAgtgagttctttcatcctgcaatgtttttagat-tttctttcttacttagtactcatatgttgtctgtatatatatatatatatatatatatatatatatatatatatatatgtgacaactaacatgttttcttgcag

upper sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 11
lower sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 9
AATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagtcccatagatttcataatccctaactgtttttttcttgttcaatgtct-catggttgccaactgttttggcttttgaatgtttctatgcag---
||    || ||||||||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||| ||||| || ||  | || || ||||||||||||| |||  | |    |  ||   | |   |  ||   | ||  ||| ||  ||| |     |    |   ||| |    | ||| |     |   
AACACGTTAAAGCTTTGTGACTTTGGTAGTGCAATGTTTGCTGGTACAAACGAAGTTACACCATATCTTGTTAGTCGCTTCTACAGAGCTCCAGAAATAAgtaagttccactgttgctgttgtcttaatcatctacttggatatttcatggctgtatgttctattataactaaagctgtactctcttttttcattgtag

upper sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 11
lower sequence: AT3G25840.1 (Arabidopsis thaliana), 5'ss of exon 9
AATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagtcccatagatttcataatccctaactgtttttttcttgttcaatgtctcatggttgccaactgttttggcttttgaatgtttctatgcag
||||| || ||||||||||| ||||||||||| |||||||| || ||||| ||||||||||| |||||||| ||||| |||||  |  |||| ||||| |||||||  ||||  |||     |    |   |  ||||  ||| | ||       ||  ||  ||   | |   ||||  | ||           
AATGTCTTAAAGCTTTGTGATTTTGGTAATGCAATGTTTGCAGGCAAAAACGAAGTTACACCGTATCTTGTTAGTCGCTTTTACAGATCCCCTGAAATTAgtaagtatcata--ttttgggttgtaaagaggacttttcattggtgaagaatatgtgactg--aagcttctattctttccattgcag--------

upper sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 9
AATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagtcccatagatttcataatccctaactgtttttttcttgttcaatgtctcatggtt--gccaactgttttggcttttgaatgtttctatgcag---------------------------------------------
|||||  |||| || ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||||||| || |||||||||||||||         |  || |   | | |||    || | ||| |    |  ||  |  |  |  |||| |   | | | ||| |    |                                              
AATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAAgtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatttttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316086|gb|GR825895.1|GR825895
EST:     TGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAA                         TACTTGGCTTGCCATATGATCATCCACTGGATATTTGGTCTGTAGGTTGTT
genomic: TGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagtccca ... ttctatgcagTACTTGGCTTGCCATATGATCATCCACTGGATATTTGGTCTGTAGGTTGTT