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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaatatagaagttaatcagctatcttgcataatggttttaacactgaatgattatattttgaacttctgtacag

Basic information

species Glycine max
transcript GLYMA20G24070.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 10
ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaatatagaagttaatcagct---atcttgcataatggttttaacactgaatgattatattttgaac---ttctgtacag---------------
|||||||| ||||| ||||| || ||||| ||||||||| | ||||| ||  |   |||||| ||||| |||||||| |||||||| ||||| |||||||||||   | | |    ||| ||    |    | ||  || |       |||  |   ||| |||  | | |||   ||  ||| |                
ATGTATACTGATCTGGCAACCATATATGAGCGAGCTGGGCGTATTGAAGGAAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgactgtttttgttgatttatttcagttttatatcaccaccacaactatct-tgagtattctataaacatgttgcgtataagatttttcctgaagt

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G181151_T01 (Zea mays), 5'ss of exon 10
ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaatatagaagtta-atcagctatcttgcataatggttttaacactgaatg----attatattttgaacttctgtacag---------------
|||||||| ||||| |||||||| ||||| || |||||| | ||||| ||  | | ||| || ||||| |||||||| ||||| || ||||| |||||||||||  ||  || |   ||  |||     | ||  ||||   | | ||      |       |  |  || || ||     || |               
ATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAGGAAGAACAGGGTCCATTACCCAAATTCCTATTCTGACAATGCCTAATGATGgtaagtaaccatggcttttttatctttgttattatataactatatgaagggcagacctagtgtagtggttagagctgtctcactgagtcaccaggccatg

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaatatagaagtta-atcagctatcttgcataatggttttaacactgaatgattatattt--tgaactt---ctgtacag
|||||||| ||||| || || ||||||||||| |||||  | ||||| || || || || || ||||||||||| |||||| |||| |||||||||||||||||||  |   |  |   | ||        | |    |   | | |  |  |    | || | |   ||||| |    |  ||||
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatcatccatattgatctagtggtgagaatttctcattatagtggcactacactcactgaacctgattttcacag

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 9
ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgt-aatgaaat------------atagaagttaatcagctatcttgcat--aatggt--tttaacactgaatgattatattttgaacttctgtacag--------------------------------------------------------------------
|||||||| ||||| || || ||||||||||| |||||  |||| || || |||||||| |||||||| || ||||| |||||||| ||||| ||||||||| | |   ||            ||  |  || |  |  |   ||   |  |||||   ||| ||  ||    ||||| |||     ||||  || |                                                                    
ATGTATACTGATCTGGCCACCATTTATGAACGTGCTGGACGAATCGAAGGCCGTAAAGGATCTATTACTCAGATTCCTATTCTAACTATGCCGAATGATGgtcagttgcatccttcctttgtcatcaagtttcagtatttgctttctttgaaatgggcattttactttgttatattatttttgctctttcttgactgcgtgcagtcttcgactgtggacttctccttgtctgtactaagcttcacctttgtggcatttcgtgcag

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 5'ss of exon 10
ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaatatagaagttaatcagctatcttgcataatggttttaacactgaatgattatattttgaacttctgtacag------------------------------------------------------------------------------------------------------------
||||| || |||||||| || ||||||||||| |||||  | |||||||| |||||||| |||||||| || || |||||| |||| |||||||| || ||||||   |     ||  |  |     |  ||   |||   |       | || |   | |   || |  |  | |  |                                                                                                             
ATGTACACCGATCTTGCCACCATTTATGAACGTGCTGGACGTATTGAGGGCCGTAAAGGATCTATTACTCAGATCCCAATTTTAACTATGCCCAACGACGgtaattttagcctcaaactc-ttgctgaatttttgtaagattagcgctgccgattagcttttcctttagttctttttgaccgcttacaagtgccagtcgccctactattttctttctgcatgaatgcctttcttttgagcctctaatcttcttctttttaatctcttttgtccctacgttctccgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16276790|gb|BI942045.1|BI942045
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: gi|21256304|gb|BQ453192.1|BQ453192
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: gi|193476671|gb|FK439532.1|FK439532
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: gi|16279439|gb|BI943437.1|BI943437
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACACGATATATCACTGAGGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: gi|207826377|gb|GD800678.1|GD800678
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: gi|208048001|gb|GD848752.1|GD848752
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTG
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTG
EST: gi|16276744|gb|BI942021.1|BI942021
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: gi|16279488|gb|BI943462.1|BI943462
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCCATGATG                         ATATTACGCANCCCAACTCC
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCA-CCCAACTCC
EST: gi|16278548|gb|BI942962.1|BI942962
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: gi|19346883|gb|BM891771.1|BM891771
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: gi|16279486|gb|BI943461.1|BI943461
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACACGATATATCACTTGAGGG-CAG
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACT-GAGGGGCAG