1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaactactgattcctgaaatcttttgtccatcatcagttacactgattctgacgaagttaatgttttctatag
species | Glycine max |
transcript | GLYMA20G23080.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|213591613|gb|DB975302.1|DB975302
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|254348440|gb|GR852119.1|GR852119
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|9900782|gb|BE609750.1|BE609750
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|9440151|gb|BE440661.1|BE440661
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|10848082|gb|BF070635.1|BF070635
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|31455934|gb|CD397962.1|CD397962
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|6914827|gb|AW396357.1|AW396357
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GAGGAGGAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|7285731|gb|AW598218.1|AW598218
genomic: GAGGAGGAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|6913405|gb|AW394935.1|AW394935
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: CAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|13482210|gb|BG511553.1|BG511553
genomic: CAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|213601764|gb|DB982489.1|DB982489
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|193640916|gb|FK588947.1|FK588947
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GGAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|254348439|gb|GR852118.1|GR852118
genomic: GGAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTEST: gi|193555675|gb|FK513222.1|FK513222
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: GAATCAAAGGATGACCCAGTTGACTCTGAT GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaa ... ttttctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCAAAGGATGACCCAGTTGACTCTGATgtaagtaaaactactgattcctgaaatcttttgtccatcatcagttacactgattctgacgaagttaatgttttctatag
- - - AGGATG