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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatctatctgacgacttatcaatcttttagtatcccaccttaggaaaaagataaaaatagtgcttaataatagtgtttccctctgtcagatgatg...

Basic information

species Glycine max
transcript GLYMA20G22600.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22600.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 11
ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct--atctgacgacttatcaatcttttagtatcccaccttaggaaaaagataaaaatagtgcttaataatagtgtttccctctgtcagatgatg
|| |||||||| |||||||||||||| |||||||||||||| ||||||||||| || ||||| |||||  | |||||||||||||||||||  |  || |   |  || ||| |  |  | | |      ||  |       |     |  | | |     ||   ||||     |    |  || 
ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacattaattttttggtttctca-taatccattcttgtgtgttctgtctttt-tgttgctgtttcctgcatttaaaatttcttcaagattaacaatc

upper sequence: GLYMA20G22600.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 9
ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatctatctgacgacttatcaatcttttagtatcccaccttaggaaaaagataaaaatagtgcttaataatagtgtttccctctgtcagatgatg-----------
 | ||||| ||||||||||||||||| || || ||| |||| ||||| ||||| || ||||| || ||  |||||||||  |||||||||    |      |  || ||  |  |  ||| |      | |      |||  |   |  || |||  |  | | |||| |||| |  |  |              
GTTTTCCACAAGCGCATGCCTCCAGAAGCAGTAGATCTGGTTTCAAGGCTACTTCAGTACTCTCCGAATCTGCGGTGCAATGCTgtgagtgatgac---ggggtttttctgttgtgaagtgt------tgatcgcgcagaccatcgt--tggttacgatgaatctttctctctattggtgggaacaggatgttga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522569|gb|BU081380.1|BU081380
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|120495461|gb|EH223628.1|EH223628
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|213604084|gb|DB974210.1|DB974210
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTACATCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|213601886|gb|DB976175.1|DB976175
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCC-TTATGTCGACGAGCTTCGTGATCCAAATAC
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCT-TCGACGAGCTTCGTGATCCAAATAC
EST: gi|6666613|gb|AW278072.1|AW278072
EST:     AAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: AAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|15287684|gb|BI471575.1|BI471575
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAG
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAG
EST: gi|207808577|gb|GD780564.1|GD780564
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|27426708|gb|CA938228.1|CA938228
EST:     ATTTGGGATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGA
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGA
EST: gi|209700633|gb|BW670436.1|BW670436
EST:     TAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: TAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|209702061|gb|BW670545.1|BW670545
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACNTGCGGTGTACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|9258249|gb|BE346396.1|BE346396
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|209699788|gb|BW655801.1|BW655801
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|209721766|gb|BW666386.1|BW666386
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|208281696|gb|GE080662.1|GE080662
EST:     AAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: AAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|12774568|gb|BG239495.1|BG239495
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|254333710|gb|GR848628.1|GR848628
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|214006743|gb|DB987625.1|DB987625
EST:     ATTTTGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCC-TTATGTCGACGAGCTTCGTGATCCAAATAC
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCT-TCGACGAGCTTCGTGATCCAAATAC
EST: gi|192321549|gb|FK012899.1|FK012899
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|6725763|gb|AW310162.1|AW310162
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|14990090|gb|BI315763.1|BI315763
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|11412139|gb|BF424159.1|BF424159
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGCGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|192321548|gb|FK012898.1|FK012898
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTTTTGGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|120492579|gb|EH220746.1|EH220746
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|13481205|gb|BG510548.1|BG510548
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|254327043|gb|GR836652.1|GR836652
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|254340934|gb|GR854662.1|GR854662
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
EST: gi|26056318|gb|CA799232.1|CA799232
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatct ... tgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACT