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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTCAAAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAGGCAGGATACATGGTTTGCTGACAATTCTCCTGTCATTGGGAACAAGgtgggtgccttatcatgtctctgatgcagttttagttgagaatattgcatcttggtatgcggaggagtttcaatactagattgagcttaatgatgatatg...

Basic information

species Glycine max
transcript GLYMA20G22210.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22210.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G05910.1 (Arabidopsis thaliana), 5'ss of exon 11
ACCTCAAAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAGGCAGGATACATGGTTTGCTGACAATTCTCCTGTCATTGGGAACAAGgtgggtgccttatcatgtctctg--atgcagttttagttgagaatattgcatcttggtatgcggaggagtttcaatactagattgagcttaatgatgatatg---
    || |||||||||||||| ||||| || ||||||||||||||| | ||||| || ||||| |||||||| ||  |||||||||| ||  |||| |||||     |    |||  ||| |   |  ||     |||     | |  | |     || | |       ||  |   || || |  |  ||  ||   | ||   
TAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAGACAAGATACTTGGTTTGCCGATGATTCTCCTGTTATCAGGAAAAAGgtaaaacctcactcaaatctttcccacacaaacaaagtaacacacaaggaaagcctgtttccact----ttctagatcttgactttgtctatggaatgtttgtag

upper sequence: GLYMA20G22210.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0060g00230.t01 (Vitis vinifera), 5'ss of exon 11
ACCTCAAAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAGGCAGGATACATGGTTTGCTGACAATTCTCCTGTCATTGGGAACAAGgtgggtgccttatcatgtctctgatgcagttttagttgagaatattgcatcttggtatgcggaggagtttcaatac-tagattgagctta-----atgatgatatg---
    ||||| || || |||||||||||||||||||||||||||||  | |||||||||||||| ||||||||||| ||||||||  | |||   ||||||||   ||||||||  || ||   |  ||   |   ||| || ||||  |||    | | |  |  | ||||  ||  |   |||||| |      ||| | |||     
TAAACAAAACGGGTTATTCATAAATTCATGTTTTGCTCACTGCCAGACAGAGAGGCAGGATACGTGGTTTGCTGATAATTCTCCCATTATTAAAAACAAGgta--tgccttatt-tgact---aaacaaaatggattg-gattatt--atccaaatcttcttacaaatttctttatatttgttgagcctttgcatatgcttatagagac