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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGgtatatttttactcatttgtatgatgcttggtctaagtttggttctatgattgctgtatgaactctatgtgcatatatgtatatcgtataaataataaatgatgtgtggcacag

Basic information

species Glycine max
transcript GLYMA20G22190.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22190.2 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os05g46270.1 (Oryza sativa), 5'ss of exon 11
ATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGgtatatttttactcatttgtatgatgcttggtctaagtttggttctatgattgctgtatgaactctatgtgcatatatgtatatcgtataaataataaatgatgtgtggcacag
 |||||||||||||  |  | || ||||||||||| |||||||| ||||| || ||||| ||||| |||||||| ||||||  |||||| |||    ||  |  | | |||  | || |   | |   |   || |||||  |    || |   |||| |  | | |  |  |  ||  ||   || | |||     ||
GTTTTGGAGGAGCTTGAACTCACTATGGACCAATTCATTGACTTGTGCATCCTATCTGGATGTGACTATTGTGATAGCATTAAAGgtatttttgctttccctcttctcatgagtagtattcctataaattcttgcttgcttgaatttctgtccatgcaaactttttttcctaaccaactatgtgtgct-tgtccgctag

upper sequence: GLYMA20G22190.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 11
ATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGgtatatttttactcatttgtatgatgcttggtctaagtttggttctatgattgctgtatgaactctatgtgcatatatgtatatcgtataaataataaatgatgtgtggcacag--
|||||||||||||| ||| | |||||||| ||||| |||||| | ||||||||||| || |||||||||||||||||||||||||||||        | || |  | ||| |||||||||   |    |  ||   || | | |    || || || | ||||  | |   |  | |  |  |   |||  |     ||  
ATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAGgtat--------taatatcaaagattcttggtcta---tcaaatgcatatatgtttttt----tccatatgtagatattcagaaaatg-ataagactatccatgcatcttgtagta