Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCTAAATGTTCTTTATCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTCGAGAAGATAATGCAGgtagggtcttttatctgtcctctattcttacatgttgctttgtgattttgaagttttgattatttttagtagttaatgtcctagtacattactaagtgct...

Basic information

species Glycine max
transcript GLYMA20G00260.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os03g26960.1 (Oryza sativa), 5'ss of exon 12
AATTCTAAATGTTCTTTATCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTCGAGAAGATAATGCAGgtagggt-----cttttatctgtcctctattcttacatgttgctttgtgattttgaagttttgattatttttagtagttaatgtcctagtacattactaagtgct
 ||  | |||||| | ||||| || |||||||| || |||||  |||| || |||||||| ||||| |||||||||||  |||| ||||||||||||||||||  ||     |    ||   |||| | ||  | | | ||  | | |  |||   ||     | ||||     || || ||  | |  ||    |   |     
GATATTGAATGTTTTATATCACAACTGTCCTTCCCAAAGAACTCTAATTATAACTCATTCCAATCAAGCTTTGAATGATTTGTTTGAGAAGATAATGCAGgtactgtaactgcaccaattactcctgttttactccttattaatctattctttatgagagagaaatattgc--atatttgatcccatgctatgccagctatc---

upper sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G410479_T01 (Zea mays), 5'ss of exon 13
AATTCTAAATGTTCTTTATCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTCGAGAAGATAATGCAGgtagggtcttt----tatctgtcctctattcttacatgttgctttgtgattttgaagttttgattatttttagta-gttaatgtccta--gtacattactaagtgct
 ||  |||||||||| ||||| || |||||||| || |||||  | || || || || || |||||||||||||||||  | || ||||||||||||||||||   | |||     || | |  |||   ||||| | || | ||   ||    |  |||| |  || | | ||   | ||||   |   |||||||| |       
GATATTAAATGTTCTATATCACAACTGTCCTTCACAAAGAACACTGATTATAACCCACTCCAATCAGGCTTTGAATGATTTATTTGAGAAGATAATGCAGgtaccatttttgtgccatatatgatctgaacttacctcttaccttac-atccgcaccttttcaagatatatggtgtatcaatgctgtgctgtacattattg------

upper sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G38770.1 (Arabidopsis thaliana), 5'ss of exon 11
AATTCTAAATGTTCTTTATCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTCGAGAAGATAATGCAGgtag----ggtcttttatctgtcctctattcttacatgttgctttgt--gattttgaagttttgatt-atttttagtagttaatgtcctagtacattactaagtgct
|||| | |||||||| || || || |||||||||||||| || || ||||| |||||||||||||||||||||||||| || || |||||||||||| |||||     ||  | ||   ||   |   |  ||| |||  |   | |   || ||  |  |||||   | || |   ||| ||   |    |  ||   |       
AATTTTGAATGTTCTATACCACAACTGTCCTTCTCAGAGGACATTGATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGGAGgtactattggcatcttcgttgcttttgttatttatatggagtcatatttaatgttttatgtttgacggagttctgagagtcaaatgctacatggatcttttttcag-

upper sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 11
AATTCTAAATGTTCTTTATCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTCGAGAAGATAATGCAGgta--gggtcttttatctg--tcctctattcttacat-gttgctttgtgattttgaag-------ttttgattatttt----tagtagttaatgtcctagtacattactaagtgct---------
 ||  | |||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||||||||||   ||  |    | |   | ||  | | | | || |||  ||| |    ||||||       |||| ||  |  |    |   | | ||  ||||    ||||  || ||            
GATCTTGAATGTTCTTTATCACAATTGCCCTTCTCAGAGAACATTAATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGCAGgtatgaggcatgaagtttaattacttgaatatgatattgtttttttttacaattgaagaagaaacttttaatgctcctccagttacaatcaagttcctgaagcatttatatgtttactatgtcag

upper sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0056g01110.t01 (Vitis vinifera), 5'ss of exon 11
AATTCTAAATGTTCTTTATCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTCGAGAAGATAATGCAGgta--gggtctt--------ttatctgt--------cctctattcttacatgttgctttgtgatttt----gaagttttgattattttt--agt---agttaatgtcctagtacattactaagtgct---------
 ||  | |||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||||||||||   ||  ||        |||  ||             |||| |||  | |   |||   |||      |||  ||| | |  || |  |||   | | ||  |||||   ||||  || ||            
GATCTTGAATGTTCTTTATCACAATTGCCCTTCTCAGAGAACATTAATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGCAGgtatgaggcattaagtttaattacttgaagatgatattgttattattatttttatttttacaattgaagaagaaacttttaatgcttctccagttagaatcaagttcctaaagcatttatatgtttactatgtcag