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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAGgtaagcttgatatctacttcttgtgaatgaatgattatgaacttttcaatcattaacatgtgaagcgcaatagatccattgttttgcctaaccaacacagtatttatctgtag

Basic information

species Glycine max
transcript GLYMA19G42790.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 11
CTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAGgtaag-cttgatatctacttcttgtgaatgaatgattatgaacttttcaatcattaacatgtgaagcgcaatagatccattgttttgcctaaccaacacagtatttatctgtag
|||||||||||||||||| | || ||||||||||||| ||||||||| | | ||| ||| | ||| | |||||||||||||| |||   ||||||   | |||    | |||  |||  |  || |||  |   |     |    || | | |   | ||   |        |   |              
CTTCAAATGGAAATCCTCGAAATCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAGgtaaggcttcccatctaccattagtgttcaattgaagatgctcacttaaattgtgttcccacta--tccagtggtttactggtggagatctgttgatggaaa------------

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 8
CTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAGgtaag-cttgatatctacttcttgtgaatgaatgattatgaacttttcaatcattaacatgtgaagcgcaatagatccattgttttgcctaaccaacacagtatttatctgtag
|||||||||||||||||| |  | ||||||||||||| ||||||||| | | |||  || | ||| | |||||||||||||| |||   ||||||   | |||    | |||  |||  | ||| |||  |   |     |    || | | |   | ||   |    |   |   |              
CTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCAGGTTCAATGCTTACCAACAGgtaaggcttcccatctaccattagtgctcaattgaagatgctcatttaaattgtgttcccacta--tccagtggtttactggtggagatctattgatggaaa------------

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 12
CTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAGgtaag-cttgatatctacttcttgtgaatgaatgattatgaacttttcaatcattaacatgtgaagcgcaatagatccattgttttgcctaaccaacacagtatttatctgtag
|||||||||||||||||| |  | ||||||||||||| ||||||||| | | |||  || | ||| | |||||||||||||| |||   ||||||   | |||    | |||  |||  | ||| |||  |   |     |    || | | |   | |    |    |   |   |              
CTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCAGGTTCAATGCTTACCAACAGgtaaggcttcccatctaccattagtgctcaattgaagatgctcatttaaattgtgttcccacta--tccagtggtttactgggggagatctattgatggaaa------------

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 5'ss of exon 9
CTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAGgtaag-cttgatatctacttcttgtgaatgaatgattatgaacttttcaatcattaacatgtgaagcgcaatagatccattgttttgcctaaccaacacagtatttatctgtag
|||||||||||||||||| |  | ||||||||||||| ||||||||| | | ||| ||| | ||| | |||||||||||||| |||   ||||||   | |||    | |||  |||  | ||| |||  |   |     |    || | | |   | ||   |        |   |              
CTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAGgtaaggcttcccatctaccattagtgctcaattgaagatgctcatttaaattgtgttcccacta--tccagtggtttactggtggagatctgttgatggaaa------------