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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatatttgactttttagcaggcctttctaactctaatttcaatccgcctaatttgtaaaatggagctgtactgctctgctttttcatgtaatgattgtttctcctcctttgaagttttatataatgggtttttactttatcttcaatatcttgtgcag

Basic information

species Glycine max
transcript GLYMA19G41420.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41420.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 11
ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatatttgactttttagcaggcctttctaactctaatttcaatccgcctaatttgtaaaatggagctgtactgct-ctgctttttcatgtaatgattgtttctcctcctttgaagttttatataatgggtttttactttatcttcaatatcttgtgcag
|| || || || |||||||||||||||||||||||||| || ||||||||||| || ||||| |||||  | ||||||||||||||||||| |||  | ||||| |      ||||| |          |||||       ||||    |    ||||  |  |  |||| |||| || | | |   ||||| |    || |   |                                          
ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacatt-aattttttgg------tttctcat---------aatccattc---ttgtgtgtt----ctgtctttttgttgctgtttcctgcatttaaaatttcttcaagattaacaatc-----------------------------------------

upper sequence: GLYMA19G41420.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 9
ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagt-atatttgactttttagcaggcctttctaactctaatttcaatccgcctaatttgtaa-aatggagctgtactgctctgctttttcatgtaatgattgtttctcctcctttgaagttttatataatgggtttttactttatcttcaatatcttgtgcag
 | || ||||||||||||||||||||||| || ||| | || ||||| ||||| || ||||| || ||  |||||||||  ||||||||| ||    |  |||||  | |   | |  |    | ||  |      | |  || || |  ||| | ||    | ||||   ||     | |  |  ||||                                                           
GTTTTCCACAAGCGCATGCCTCCAGAAGCAGTAGATCTGGTTTCAAGGCTACTTCAGTACTCTCCGAATCTGCGGTGCAATGCTgtgagtgatgacggggttttt--ctg--ttgtgaagtgttgatcgcgcagaccatcgttggttacgatgaatct----ttctctctattggtgggaacaggatgttga---------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193407080|gb|FK375255.1|FK375255
EST:     ATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACCCATCCTTTCTTTGATGA
genomic: ATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatat ... tcttgtgcagTTAGATGCCTTGACCCATCCTTTCTTTGATGA
EST: gi|26047711|gb|CA784420.1|CA784420
EST:     ATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
genomic: ATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatat ... tcttgtgcagTTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
EST: gi|6963904|gb|AW432597.1|AW432597
EST:     ATGTAGTATCAAGACTACTACAATACTGCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTGGACCCATCGCTT-CTATGATGAACTACGAGACCCAAACAC
genomic: ATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatat ... tcttgtgcagTTAGATGCCTTGACCCATC-CTTTCTTTGATGAACTTCGTGACCCAAACAC