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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACGAGATGAATGCATTCAGATCATACACACTTGGGATGAATTTGTGCAAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattgtgtattttctttcaaatataatgttcctgatgtcttgatatgttttgatttttaaggaacttcattgtttgagtagtacactactgttgt...

Basic information

species Glycine max
transcript GLYMA19G40930.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193390778|gb|FK354542.1|FK354542
EST:     AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG                         GAGGTTGTAGGCTGATGTCAA
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTG-AGGCTGATGTCAA
EST: gi|209700236|gb|BW664461.1|BW664461
EST:     AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG                         GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: gi|193400954|gb|FK366733.1|FK366733
EST:     AAGCTTTGAACCAAAGAAAA-TGATCTTAGCTCCTTGGTGTGACGAGGAG                         GAGGTTTGAGGCTGATGTCAAAGCGAGGACAAAGGG
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTT-GAGGCTGATGTCAAAGCGAGGACAAAGGG
EST: gi|193495226|gb|FK463210.1|FK463210
EST:     AATGATCTTAGCTCCTTGGTGTGACGAGGAG                         GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
genomic: AATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: gi|58024431|gb|CX711172.1|CX711172
EST:     AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG                         GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: gi|22932318|gb|BU549457.1|BU549457
EST:     AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG                         GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: gi|208271089|gb|GE066163.1|GE066163
EST:     GGTGTGACGAGGAG                         GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
genomic: GGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: gi|193480397|gb|FK446803.1|FK446803
EST:     TGAACCAAAGAAAAATGTATCTTAGCTCCTTGGTGTGACGAGGAG                         GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
genomic: TGAACCAAAGAAAAATG-ATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: gi|58014455|gb|CX701197.1|CX701197
EST:     AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG                         GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: gi|193616107|gb|FK571925.1|FK571925
EST:     AATGATCTTAGCTCCTTGGTGTGACGAGGAG                         GAGGTTGAGGCTGATGT
genomic: AATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGT
EST: gi|213608486|gb|DB974743.1|DB974743
EST:     GCTTTGAACCAAAGAAAAAT-ATTAATT-GCTCCTTGGTGTGACGAGGAG                         GAGGTTGAGGCTGATAACAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
genomic: GCTTTGAACCAAAGAAAAATGA-T-CTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: gi|209707572|gb|BW680942.1|BW680942
EST:     AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG                         GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: gi|193370419|gb|FK334069.1|FK334069
EST:     AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG                         GAGGTTAGAGGCTGAT
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTT-GAGGCTGAT
EST: gi|48574957|gb|CO036162.1|CO036162
EST:     AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG                         GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAACGAGATGAATGCATTCAGATCATACACACTTGGGATGAATTTGTGCAAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattgtgtattttctttcaaatataatgttcctgatgtcttgatatgttttgatttttaaggaacttcattgtttgagtagtacactactgttgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG