1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTATTTATATATGGAGGTGTAGGTCCACTGCATTCAGATGTTAGCATAGCAGGCATTGCAAAAGCTTTTGGTGTTCGTTTGgtgcgttacttcaattgctgtatttttaaatttgaggctactataatcattccctaatatgctctgttcatccatatctattagagtagttagtctctac...
species | Glycine max |
transcript | GLYMA19G36860.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATTCAGATGTTAGCATAGCAGGCATTGCAAAAGCTTTTGGTGTTCGTTTG GCTCCAGATGAAGAATTTGAAGAATATCTCAGGCATATTATTGGTGATCAAEST: gi|13480154|gb|BG509497.1|BG509497
genomic: ATTCAGATGTTAGCATAGCAGGCATTGCAAAAGCTTTTGGTGTTCGTTTGgtgcgttact ... tttgatgtagGCTCCAGATGAAGAATTTGAAGAATATCTCAGGCATATTATTGGTGATCAA
EST: ATTCAGATGTTAGCATAGCAGGCATTGCAAAAGCTTTTGGTGTTCGTTTG GCTCCAGATGAAGAATTTGAAGAATATCTCAGGCATATTATTGGEST: gi|6667659|gb|AW279110.1|AW279110
genomic: ATTCAGATGTTAGCATAGCAGGCATTGCAAAAGCTTTTGGTGTTCGTTTGgtgcgttact ... tttgatgtagGCTCCAGATGAAGAATTTGAAGAATATCTCAGGCATATTATTGG
EST: ATTCAGATGTTAGCATAGCAGGCATTGCAAAAGCTTTTGGTGTTCGTTTG GCTCCAGATGAAGAATTTGAAGAATATCTCAGGCATATTATTGGTGATCAAEST: gi|193715077|gb|FK650214.1|FK650214
genomic: ATTCAGATGTTAGCATAGCAGGCATTGCAAAAGCTTTTGGTGTTCGTTTGgtgcgttact ... tttgatgtagGCTCCAGATGAAGAATTTGAAGAATATCTCAGGCATATTATTGGTGATCAA
EST: ATTCAGATGTTAGCATAGCAGGCGTTGCAAAAGCTTTTGGTGTTCGTTTG GCTCCAGATGAAGAATTTGAA
genomic: ATTCAGATGTTAGCATAGCAGGCATTGCAAAAGCTTTTGGTGTTCGTTTGgtgcgttact ... tttgatgtagGCTCCAGATGAAGAATTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTTATATATGGAGGTGTAGGTCCACTGCATTCAGATGTTAGCATAGCAGGCATTGCAAAAGCTTTTGGTGTTCGTTTGgtgcgttacttcaattgctgtatttttaaatttgaggctactataatcattccctaatatgctctgttcatccatatctattagagtagttagtctctac
- - - - - - - - - - - - - - - - - CAGATG