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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGgtatgttagctttacttacattacagataacttggactcgttatcttttccaagttatgtgtatctttgtatctgtcaaatgttatgttgtataccttgt...

Basic information

species Glycine max
transcript GLYMA19G36140.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36140.3 (Glycine max), 5'ss of exon 11
lower sequence: AT5G02830.1 (Arabidopsis thaliana), 5'ss of exon 9
GTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGgtatg--ttagctttacttacattacaga---taacttggactcgttatcttttc----caagttatgtgtatctttgtatctgtcaaatgttatgttgtataccttgt--
||||||||||| |||||||| || ||||| || |||||||| | ||| ||| |||| |||||| |||||||||| ||||| |||||||| |||||||||| | ||||||| || | | | || || | || || | ||||| | | | | | | ||| | | | | || ||
GTGACATATAATACACTTCTTAAAGCACGAAGCAAATATGGTTCTTTACTTGAAGTGCGGCAATGCTTGGCTATATATCAGGACATGCGAAATGCAGGgtatgaacaatttttacttttatggtctactttcatttctcttcctgatggttccgcaacaagtaaggaggcattcctttttactcacaaacaaagccaca-acactgcag

upper sequence: GLYMA19G36140.3 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0040g03240.t01 (Vitis vinifera), 5'ss of exon 9
GTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGgtatgttagctttacttacattacagataacttggactcgttatcttttccaagttatgtgtatctttgtatctgtcaaatgttatgttgtataccttgt----
||||| ||||| |||||| | | || || |||| ||| || | | ||||||| || ||||| |||||||||||||| ||| ||||||| || |||||||||||| ||| | ||| | || | ||||| || |||| | | ||| ||||| | ||||| | | |
GTGACCTATAATACACTTTTAAGAGCTCGAAGTAGATACGGTTCCTTACATGAAGTACAACAGTGCCTGGCTATATATCAGCATATGCGGAAAGCAGGgtatgttgaatttgtacaaatttttttccattt----tacttatcattgccaaatgagcagtacttttgtggcattcaaagtgcttcccaagcaaggtaggaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9902238|gb|BE611206.1|BE611206
EST:     CATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGG                         GTACAAACCCAATGACTACTATCTAGAAGAACTGATTGAGGAGTGGTGTGA
genomic: CATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGgtatgttagc ... tgtattgcagGTACAAACCCAATGACTACTATCTAGAAGAACTGATTGAGGAGTGGTGTGA
EST: gi|7796307|gb|AW781704.1|AW781704
EST:     CATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGG                         GTACAAACCCAATGACTACTATCTAGAAGAACTGATTGAGGAGTGGTGTGA
genomic: CATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGgtatgttagc ... tgtattgcagGTACAAACCCAATGACTACTATCTAGAAGAACTGATTGAGGAGTGGTGTGA