Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGgtatgttagctttacttacattacagataacttggactcgttatcttttccaagttatgtgtatctttgtatctgtcaaatgttatgttgtataccttgt...

Basic information

species Glycine max
transcript GLYMA19G36140.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36140.3 (Glycine max), 5'ss of exon 11
lower sequence: AT5G02830.1 (Arabidopsis thaliana), 5'ss of exon 9
GTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGgtatg--ttagctttacttacattacaga---taacttggactcgttatcttttc----caagttatgtgtatctttgtatctgtcaaatgttatgttgtataccttgt--
||||||||||| |||||||| || ||||| || |||||||| |   ||| ||| ||||  |||||| |||||||||| ||||| |||||||| ||||||||||    |  |||||||  ||     |   | | ||    || | ||  || |    ||||| | | |    |   | |   ||| |    | |    | ||  ||   
GTGACATATAATACACTTCTTAAAGCACGAAGCAAATATGGTTCTTTACTTGAAGTGCGGCAATGCTTGGCTATATATCAGGACATGCGAAATGCAGGgtatgaacaatttttacttttatggtctactttcatttctcttcctgatggttccgcaacaagtaaggaggcattcctttttactcacaaacaaagccaca-acactgcag

upper sequence: GLYMA19G36140.3 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0040g03240.t01 (Vitis vinifera), 5'ss of exon 9
GTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGgtatgttagctttacttacattacagataacttggactcgttatcttttccaagttatgtgtatctttgtatctgtcaaatgttatgttgtataccttgt----
||||| ||||| |||||| | |  || || |||| ||| || | | ||||||| || ||||| |||||||||||||| ||| ||||||| || ||||||||||||   |||    | |||       | ||    |  ||||| || |||| | |   |||  |||||  |  |||||     |       |   |      
GTGACCTATAATACACTTTTAAGAGCTCGAAGTAGATACGGTTCCTTACATGAAGTACAACAGTGCCTGGCTATATATCAGCATATGCGGAAAGCAGGgtatgttgaatttgtacaaatttttttccattt----tacttatcattgccaaatgagcagtacttttgtggcattcaaagtgcttcccaagcaaggtaggaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9902238|gb|BE611206.1|BE611206
EST:     CATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGG                         GTACAAACCCAATGACTACTATCTAGAAGAACTGATTGAGGAGTGGTGTGA
genomic: CATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGgtatgttagc ... tgtattgcagGTACAAACCCAATGACTACTATCTAGAAGAACTGATTGAGGAGTGGTGTGA
EST: gi|7796307|gb|AW781704.1|AW781704
EST:     CATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGG                         GTACAAACCCAATGACTACTATCTAGAAGAACTGATTGAGGAGTGGTGTGA
genomic: CATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGgtatgttagc ... tgtattgcagGTACAAACCCAATGACTACTATCTAGAAGAACTGATTGAGGAGTGGTGTGA