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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGCATGATGTTGAGCAGCTACTGGTGTCGCTTATTTTGGATAACAGAATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGCTCTGATAGgtgagtttttatgttcaattcctttttactggatttagtttttattcataattttgtttgtaaaaaacctcgtatctttactaacattctaaatgcatgttcag

Basic information

species Glycine max
transcript GLYMA19G30100.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G30100.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 11
CTGAGCATGATGTTGAGCAGCTACTGGTGTCGCTTATTTTGGATAACAGAATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGCTCTGATAGgtgagtttttatgttcaattcctttttactggatttagtttttattcataattttgtttgtaaaaaacctcgtatctttactaacattctaaatgcatgttcag
| ||| | ||||||||||||||  |||||||||| |||||||||||| |||||||||| || ||||||||||| |||||  | ||||| ||   ||| ||||    ||| || ||       |||||| ||   |||  | || ||  |  | | |||  ||  |     | |   ||  |||   | |               
CAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttcatttt-----tttttttattga--ttatctgttgtt-gttgtatcgttaatattatttaccttggtttatctattgtccag-------------